PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004431
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 764aa    MW: 82969.8 Da    PI: 6.482
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004431genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.4e-32349406260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k
  Cla004431 349 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHPK 406
                7****************************************.***************85 PP
2WRKY103.11.6e-32564622159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+
  Cla004431 564 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHD 622
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-28347407IPR003657WRKY domain
SuperFamilySSF1182909.29E-25347407IPR003657WRKY domain
SMARTSM007746.4E-36348406IPR003657WRKY domain
PROSITE profilePS5081123.158349407IPR003657WRKY domain
PfamPF031061.2E-24349405IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-37549624IPR003657WRKY domain
SuperFamilySSF1182901.57E-28556624IPR003657WRKY domain
PROSITE profilePS5081138.124559624IPR003657WRKY domain
SMARTSM007747.5E-38564623IPR003657WRKY domain
PfamPF031068.5E-25565622IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MLRSSLDLGI RPHLGGFVVR ARDQVVMGRT DDNVAIIGDW VPPSPSPRTF FSAMQMLGED  60
IGSRPAMDTT SSDHKTEELF LRPREHTVSE NAVARGGIPG ANSGDRATEF GTFSEQKFRG  120
GLVERIAARA GFNAPRLNTE SIRSTDHSLN SEVKSPYLTI PPGLSPTTLL DSPVFLSNSL  180
AQQSPTTGKF QFLANVSNNR SSTMMSEANN NPFDDNSTSF AFRPSVESGS SFILSAAASK  240
TASATILPQS CPRIEVPVPR SENSFQSHLV EPSLSLPQNR IGHHPQVGLS TSYMEKDDVG  300
KTVSDDQRPF DSLCGGGEHS PPLDEQPDEG EQRGSGDSMA GSGCGAPSED GYNWRKYGQK  360
QVKGSEYPRS YYKCTHPNCQ VKKKVERSHE GHITEIIYKG AHNHPKPSPN RRVAIGSSDS  420
HINMQPDIPA QAAGQQSAEV SVWEDSQKGI PTGAPDWMQE NLEVTSSASL GPEYGNQPNP  480
LQAQNSSHIE TAEAIDASST FSNDEDEDDR GTHGSITLGY EGEGDESESK KRKLDAYVTE  540
MSGATRAIRE PRVVVQTTSE VDILDDGYRW RKYGQKVVKG NPNPRSYYKC TNPGCTVRKH  600
VERASHDLKS VITTYEGKHN HDVPAARNSS HISSGTSSPV TGQNSTAAMQ THVHRPGPPQ  660
PQNTIPRFER PAFGFAGRQQ MGTAFGMNQP GLGNLTMAAV GQAKLPVMPM HPYLAQAHHV  720
HEMGFLLPKG EPNVEPTSDL GLNFSNGSTV YQQIMSRLPL GPEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37349625878Probable WRKY transcription factor 4
2lex_A2e-37349625878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840160.0GU984016.1 Cucumis sativus WRKY protein (WRKY16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448990.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A1S3BLY10.0A0A1S3BLY1_CUCME; probable WRKY transcription factor 2
STRINGXP_008448990.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]