PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla004233
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 354aa    MW: 39061.1 Da    PI: 5.215
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla004233genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.28.3e-29138199159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                ldDg++WrKYGqK + g+++pr+YYrCt++   gC ++k+v+rs++dp+v+eitY+g+H ++
  Cla004233 138 LDDGFCWRKYGQKGILGAKHPRGYYRCTYRnlqGCLATKQVQRSDDDPTVFEITYRGKHSCS 199
                59***************************98999*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.124133197IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-27135200IPR003657WRKY domain
SuperFamilySSF1182903.79E-25137200IPR003657WRKY domain
SMARTSM007745.7E-40138200IPR003657WRKY domain
PfamPF031066.8E-26139198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MENFVERNQN KLKNELLKGK ELAKQLQIHL NMRPSASSTA ASSSSSSSFS NDNGGELLVQ  60
KILCSYEKAL SLLNSNGIQI SESPSSINGG SPRSEDSDRE FKDLFDQTNA NSSRRRNILP  120
IWTQKFQVSP GMALEGSLDD GFCWRKYGQK GILGAKHPRG YYRCTYRNLQ GCLATKQVQR  180
SDDDPTVFEI TYRGKHSCSQ VSNLSTPSTT TPKFQQQNQQ TSPDALLNSW ASLRVITQNL  240
DTTIHETPTL SFHYDAADRV ETSTGDVNFA EFSPCSSFMS PTTSGSGLSY WSASSSGLSE  300
GFVGNQKLDL QPNKCEIFSS PTSALDSETP ALDFPFGDLQ LDPTFTFDDT NFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-20137198768OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818495e-48LN681849.1 Cucumis melo genomic scaffold, anchoredscaffold00116.
GenBankLN7132605e-48LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651414.11e-177PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A0A0LB141e-176A0A0A0LB14_CUCSA; Uncharacterized protein
STRINGXP_008465380.11e-176(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.14e-47WRKY DNA-binding protein 30