PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla003898
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 349aa    MW: 38751.6 Da    PI: 8.3967
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla003898genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.46.5e-15262287126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +ktelC+ +++tG C+yGd C+FaHg
  Cla003898 262 FKTELCNKWQETGSCPYGDHCQFAHG 287
                79***********************8 PP
2zf-CCCH18.44e-06300324125
                --S---SGGGGTS.--TTTTT-SS-S CS
    zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                ykte Cr  ++ G  C+yG rC+F H
  Cla003898 300 YKTEVCRMVLA-GvVCPYGHRCHFRH 324
                9**********.66**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-19256294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-11258293IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-9261288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.493261289IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-12262287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-8295329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-11295326IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4299326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803299327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MHKSTTSASN TIAAATTMSS SSQLKSQLQT NDVYASLYNS PIFAPKQSVP VSLPLTLYGD  60
STHADSTSSS KTISSHLYQT RVVQDHQEMV NRHSLCLTHL REATEEADAL RQENIHLRSI  120
NHELSKHLSL LIHASVQKQY GSSDQAPPFN FVEGFRGLSV SEKGASSSAW EDISDESPTS  180
VMEGGRVEGV EVERFSLPKS ISVRSNGYLK MAQAGTSQGG KVRASSRPRT ASPVKVTQKV  240
YVQGVKEEEK PLELEVYNQG MFKTELCNKW QETGSCPYGD HCQFAHGIEE LRPVIRHPRY  300
KTEVCRMVLA GVVCPYGHRC HFRHALTDQE RLMGTLKPTC RTTTPKLDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-21262324466Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008467171.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like isoform X1
SwissprotQ9C9F53e-84C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A1S3CSW30.0A0A1S3CSW3_CUCME; zinc finger CCCH domain-containing protein 15-like isoform X1
STRINGXP_008467171.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.14e-82C3H family protein