PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla003202 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | GATA | ||||||||
Protein Properties | Length: 206aa MW: 23690.2 Da PI: 9.9564 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 24.6 | 3.4e-08 | 182 | 203 | 1 | 20 |
GATA 1 Cs..nCgttkTplWRrgpdgnk 20 C+ nC+t Tp+WR+gp g+k Cla003202 182 CTnyNCNTNFTPMWRKGPLGPK 203 55559***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 4.0E-4 | 180 | 201 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MDSRSQLWRQ MKSHECDHHR RFHSETQVDL TLRLGFPNAN DAGERPDIDH NNPFFNHHQV 60 MMNNHGLASS GGRNNEMMSE PNYNPHQIVW SKELKTYVLK SNNFGQLHPS SYSSTHQAKP 120 IGITPNNSPN LPLPKHNNDL YTLLNPASRI TDDHEAEASS GGRRRGSRRR RVSANNDIER 180 RCTNYNCNTN FTPMWRKGPL GPKVRD |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681842 | 1e-100 | LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022. | |||
GenBank | LN713259 | 1e-100 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022985849.1 | 5e-91 | GATA zinc finger domain-containing protein 8-like | ||||
TrEMBL | A0A0A0L0J0 | 2e-69 | A0A0A0L0J0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004162027.1 | 1e-100 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13778 | 16 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20750.1 | 5e-07 | GATA transcription factor 29 |