PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002628
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MIKC_MADS
Protein Properties Length: 179aa    MW: 20363.3 Da    PI: 10.4985
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002628genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.41.8e-28959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien + rqvtfskRrng+lKKA+ELSvLCdaeva++ifs++gk y +ss
  Cla002628  9 KRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLIFSPSGKAYQFSS 59
               79***********************************************96 PP
2K-box70.16.9e-24821621191
      K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                ++ a  +++e++ +k+ i++L+  +Rh+ GedL+ Ls+keL+qLe+q+  ++++iRskK++ l e+ ++lqk+ ++l++  
  Cla002628  82 HSRALFWKTEMEDMKRSISSLEARLRHFAGEDLGLLSVKELKQLERQMSVGIERIRSKKYKGLQEEHSRLQKRLNQLKDVA 162
                556778*********************************************************************999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.9E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.646161IPR002100Transcription factor, MADS-box
CDDcd002656.01E-41272No hitNo description
SuperFamilySSF554555.36E-34291IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-31323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-313859IPR002100Transcription factor, MADS-box
PfamPF014867.2E-1983160IPR002487Transcription factor, K-box
PROSITE profilePS5129711.45985179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAYELSVLCD AEVALLIFSP SGKAYQFSSH  60
DMDGTLARYR SDVGLPQSNH PHSRALFWKT EMEDMKRSIS SLEARLRHFA GEDLGLLSVK  120
ELKQLERQMS VGIERIRSKK YKGLQEEHSR LQKRLNQLKD VAVTNSRTSD ANAASALEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-25182176MEF2C
5f28_B7e-25182176MEF2C
5f28_C7e-25182176MEF2C
5f28_D7e-25182176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0465961e-172AB046596.1 Cucumis sativus ERAF17 mRNA for putative MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023519986.11e-117truncated transcription factor CAULIFLOWER D-like
SwissprotQ8LLR11e-47MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLQ9AYR81e-114Q9AYR8_CUCSA; Putative MADS-box protein
STRINGXP_004145150.11e-115(Cucumis sativus)
STRINGXP_004154125.11e-115(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.21e-48MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]