PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002170
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 240aa    MW: 26792.5 Da    PI: 8.9502
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002170genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.97.2e-31161351128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lp+G+rF Ptdeelv +yLk+kv + +l++ +vi+e+d++ ++Pw Lp  +   +++ +fFsk+++        +r +  g+Wk+ gk+k +ls+  +++
  Cla002170  16 LPVGYRFCPTDEELVGHYLKRKVFDLPLPA-SVIPEFDVFLTDPWGLPGDL---KEKRFFFSKQKSFL------RRRAGCGIWKSIGKEKFILSQgINQV 105
                799***************************.99***************544...45679998876654......455688**************955667 PP

        NAM 100 vglkktLvfykg.rapkgektdWvmheyrl 128
                 gl+k+Lvf +  ++++++ t+Wvmheyrl
  Cla002170 106 LGLRKSLVFSESkSSERTRATRWVMHEYRL 135
                9*********7636677889********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-3611160IPR003441NAC domain
PROSITE profilePS5100538.33916162IPR003441NAC domain
PfamPF023651.1E-2217135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEKTSNYVVN GGGIRLPVGY RFCPTDEELV GHYLKRKVFD LPLPASVIPE FDVFLTDPWG  60
LPGDLKEKRF FFSKQKSFLR RRAGCGIWKS IGKEKFILSQ GINQVLGLRK SLVFSESKSS  120
ERTRATRWVM HEYRLARSAS ATTPNSAQIE VGDLAVYCLF QKRRKPKRQG VEENQRLAVA  180
EASVLDLTVE DGWEFPQPCS SCSSGVTEVS SNGTESTDQE ESSSGLGLGL GFSSYFLKLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-221413513140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022983248.11e-142NAC domain-containing protein 83-like isoform X2
SwissprotQ9FY933e-38NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0H4K7821e-129A0A0H4K782_MOMCH; NAC domain-containing protein 68
STRINGXP_008450147.11e-109(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-40NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]