PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001961
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Trihelix
Protein Properties Length: 545aa    MW: 61805.7 Da    PI: 5.7195
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001961genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.12.1e-2758143186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                rW++qe+laL+++r++m+  +r++  k+plW+evs+k+ e gf+r+pk+Ckek+en+ k++k++k+ +++++++s++ +++ d+le
  Cla001961  58 RWPRQETLALLKIRSDMDAIFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKDVRSGKSDNSKKVYRFSDELE 143
                8*********************************************************************9999999999999987 PP
2trihelix105.73.2e-33379464187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+k ev aLi++r+eme +++++  k+ lWee+s++mr  g++rs+k+Ckekwen+nk++kk+k+++kkr +e+s+tcpyf+ql+a
  Cla001961 379 RWPKGEVEALIRLRTEMEMKYQENGPKGLLWEEISAAMRGLGYNRSSKRCKEKWENINKYFKKVKDSNKKR-AEDSKTCPYFHQLDA 464
                8*********************************************************************8.89999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.36451115IPR017877Myb-like domain
SMARTSM007172.0E-455117IPR001005SANT/Myb domain
CDDcd122031.12E-2257122No hitNo description
PfamPF138373.8E-1757138No hitNo description
SMARTSM007171.7E-4376438IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-4378435IPR009057Homeodomain-like
PROSITE profilePS500907.491378436IPR017877Myb-like domain
CDDcd122035.15E-26378443No hitNo description
PfamPF138374.1E-23379465No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MDVDSGEAVV TEAGEAHEVG NGDGRGGGGG NGSNSGEEDK GSSLLLFEDG EKNFGGNRWP  60
RQETLALLKI RSDMDAIFRD ATHKAPLWDE VSRKLGELGF NRTPKKCKEK FENVYKYHKR  120
TKDVRSGKSD NSKKVYRFSD ELEAFDHHNS HHQNHILFQS HHHQPPQPPP PLPPVPPTTT  180
TTPPPVMKTV NSTVSSTMNT TTNNNSLPPK SSNNPLSNLP NMAANVMFSS STSSSTASEE  240
DPFRSSRRRR KKRKWSDFFL RLTKEVIEKQ EGLQLKFLEA LERIENQRKL RDEAWRMKEM  300
KRVNQEHEVL VQEMSMAAAK DAAVVAFLQK IAPFSAPPPP PPPPPMTTQS QNNENNGKMT  360
SVIPMTNGKV SSIGGSPSRW PKGEVEALIR LRTEMEMKYQ ENGPKGLLWE EISAAMRGLG  420
YNRSSKRCKE KWENINKYFK KVKDSNKKRA EDSKTCPYFH QLDALYREKE KNMNNFDINS  480
QMEPLMVEPE QQWPPPFQAN NQIMGSLQRI NDEGNQEEDD DEEEEEEEEE EEEEDGGSSS  540
TDVED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247252RRRKKR
2247253RRRKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818171e-177LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBankLN7132571e-177LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656564.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-124TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0A0KE500.0A0A0A0KE50_CUCSA; Uncharacterized protein
STRINGXP_008445762.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-70Trihelix family protein