PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001226
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 610aa    MW: 69350.4 Da    PI: 5.1842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001226genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.41.9e-064364691755
                HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                N++f  L+++lP++        +K++iL  +++Y+k+L+
  Cla001226 436 NEKFMALKSMLPSL-----NEINKVSILNDTIKYLKMLE 469
                99***********8.....58***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.3E-2515128IPR025610Transcription factor MYC/MYB N-terminal
SMARTSM003531.3E-4428474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.32E-6434473No hitNo description
Gene3DG3DSA:4.10.280.104.1E-9436482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-9436490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MANGLENCDS EPGFLRKQLA VAVKSIQWSY AIFWSPSTRQ HGVLEWCDGY YNGDIKTRKT  60
VQAEDVHINN MGLHRSEQLR ELYKSLLEGE SEQRAKKPPA ALSPEDLSDA EWYYLVCMSF  120
FFNQGQGLWF AFPKTEVCFP YLDGVIELGV TEQVSEDPNL LQHVKDFLLK FSKPICSKKP  180
FSAAYKDDNG KELMTAKSDN EIVEVLAMEN LYCLTGVNFD GKAVNGIQRK NNEFGIDSLN  240
DFSNGCEQYH HQVESPLRLE GVEGGASRFQ SLQFLDDDFS YGFQDSMNPS DCISEALANQ  300
EKVSSSPRSS GANDLPLKEL QNSNHTKSGS LDSRSDEDMH YKRTIFTILG SSTQLVGSPL  360
LHNFSSRSSF VPWKKGMAET HTLPMQQRML KKILFTVPLL SAGSLNGLKD GERSILKQGN  420
NDFCTKNVMH DKLRENEKFM ALKSMLPSLN EINKVSILND TIKYLKMLET RVQELETCMD  480
SLYYEERFRR KYLDMVEQTS DNYDYEKIEG SFKPSTNKRK ACEMDETDLK LKNDIPKDGH  540
KLDVKVTMKE QEVLVDMHCP YREYILVDVM DALNDLQLDA HSVQSSDHNG VFSLTLKSKV  600
CSLVSDICFS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1904880.0JN190488.1 Cucumis sativus GL3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001292635.10.0transcription factor EGL1
TrEMBLI6N8K60.0I6N8K6_CUCSA; GL3
STRINGXP_004138502.10.0(Cucumis sativus)
STRINGXP_004168375.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-118bHLH family protein