PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla000891
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GATA
Protein Properties Length: 333aa    MW: 36416.4 Da    PI: 6.6919
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla000891genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.22e-17228262135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +C++ kTp+WR gp g+ktLCnaCG++y++ +l
  Cla000891 228 CLHCQAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 262
                99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.9E-7915314IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.4222258IPR000679Zinc finger, GATA-type
SMARTSM004016.7E-17222272IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15223286No hitNo description
Gene3DG3DSA:3.30.50.101.8E-14223259IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.80E-13227278No hitNo description
PfamPF003204.6E-15228262IPR000679Zinc finger, GATA-type
PROSITE patternPS003440228253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEVNKFLIGG YFDGGVGEFS PEKTKAAEHF TIDDLLDFSN EDVIMTDGFF DNVAGSSTDS  60
STVTAVDSCN SSVSGGDHHH FHGNIGSRSF DESQFSGDLC VPCDDLAELE WLSNFVEDSF  120
STEGKDLQAL NYLSNSHSIS KPQTPETSSS SELPPSVSIP SDSSKNSPRF PAETPLPCKA  180
RSKRSRTAPC DWTTRLLHLL SPADPKPPKS SSSKKKDAPS GDSSGRKCLH CQAEKTPQWR  240
TGPMGPKTLC NACGVRYKSG RLVPEYRPAA SPTFISAKHS NSHRKVLELR RQKELQIAQQ  300
QQFINQSSIF GVTNGCDEYL ISHHMGPSVR HMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462442.10.0PREDICTED: GATA transcription factor 9-like
SwissprotP697816e-76GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A1S3CIH20.0A0A1S3CIH2_CUCME; GATA transcription factor
STRINGXP_008462442.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-62GATA transcription factor 9
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]