PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.9490s0014.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CPP
Protein Properties Length: 647aa    MW: 71376.3 Da    PI: 5.6052
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.9490s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.73e-15457495240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+C+C+kskClk+YC+Cfaag +C e C+C++C+Nk 
  Cagra.9490s0014.1.p 457 SCKRCKCRKSKCLKLYCDCFAAGLYCVEPCSCQNCFNKP 495
                          589**********************************96 PP
2TCR51.42.2e-16543581240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          +++gCnC+ks ClkkYCeC+  g+ Cs++C+C +CkN+ 
  Cagra.9490s0014.1.p 543 HTRGCNCRKSGCLKKYCECYMMGVGCSSNCRCMGCKNNF 581
                          889**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.5E-16456497IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.157457582IPR005172CRC domain
PfamPF036381.6E-10459494IPR005172CRC domain
SMARTSM011142.2E-19542583IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.8E-12545580IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MDTPEKNRIS AVSFRNFEDS PVFQYINDLS PIEPVKPPRS ENILHSLAFT SPSSLFSSPQ  60
LNSYRDSRFS IKRHRTLDLS SPVVLIGETI KNSPDALEAV KITGLSEEQL KCRPEQLANV  120
SETKPFKEQL SLAIELADSL KNGREGCDSQ MVSCDEEPMD AENEIGRSGG LRELSDELCR  180
QPNDSFDFDA GPDGVLQTEE MGTVSVFGAE NAMLEVAGIQ NSEQQIPKIT DPKFNSFASE  240
PLQFSICCNN SVNVVEPRGS CSVQISPGAP EITLSSSSKV AAISSIAEAE CKEDTGLQPS  300
RKQQSVRRRC LTFDVGGSHK KIPLRDSTND LPLHSVSISK APSPQECLET SKQDADEIIP  360
IPRTIGLHLN SFVNPSVSSD RKKKKINDDR YFPPVPTTFH HNIKDEFSTP VSTKRDLGYS  420
DVKIMEAPER SMEGESFDQH MATKNRKLSQ GLDELGSCKR CKCRKSKCLK LYCDCFAAGL  480
YCVEPCSCQN CFNKPIHEDL VIKAREVIEA RNPLAFAPKV VSTSDSAIDL WDENSKTPAS  540
ARHTRGCNCR KSGCLKKYCE CYMMGVGCSS NCRCMGCKNN FIHKNEKCEG ESDAVTINDE  600
AKDNDDHADA SSQNEDASKS ERRNCVLLQS PVAFRSLASL RKLSEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1945957912120Protein lin-54 homolog
5fd3_B3e-1945957912120Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.9490s0014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023642810.10.0protein tesmin/TSO1-like CXC 4 isoform X1
SwissprotQ84JZ80.0TCX4_ARATH; Protein tesmin/TSO1-like CXC 4
TrEMBLR0HXB60.0R0HXB6_9BRAS; Uncharacterized protein
STRINGCagra.9490s0014.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148401620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.10.0Tesmin/TSO1-like CXC domain-containing protein