PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.8966s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 405aa    MW: 44286.8 Da    PI: 5.4055
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.8966s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573105.25.1e-33206301296
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkife 90 
                          lf+r+wseeDei+lL+G++d++++tgk + +d+++ +e+vk+sisf+vs sq+++K+++LK K+ kk +k ++ g++ + + +hd+k+fe
  Cagra.8966s0005.1.p 206 LFKRIWSEEDEILLLKGMVDYRSSTGKTALEDVNGYFETVKNSISFEVSISQFSSKVKSLKGKYLKKITKmKDAGESSVKKDPHDRKCFE 295
                          69*******************************************************************94556677777889******* PP

               DUF573  91 lskkiW 96 
                          l+k++ 
  Cagra.8966s0005.1.p 296 LAKIVL 301
                          ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.5E-26207300IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MAKKKQSQPL VTPSTAKKLL PVSSTAKKQS QVASTSKQPP ENPSPMKKKP TEIASPVKKP  60
PVLALASTSK NKKQPEPVKI PPPPESSSDE EEEEEEEEEG SGSEEEEEEP GSEGEEEQDE  120
PVKKVPETAP VVSVTNESTD SESESETEGG DSEAEPEQAT PLRVAASPPK KKRQSEAAAS  180
TEPNPSKRAK TKGESGTETN NTKNSLFKRI WSEEDEILLL KGMVDYRSST GKTALEDVNG  240
YFETVKNSIS FEVSISQFSS KVKSLKGKYL KKITKMKDAG ESSVKKDPHD RKCFELAKIV  300
LGDYVGSTKT AVVKSTRRKI KLDNGSSKAG DAEWFGNSFI IRAITSYGPV ADEEAVMGKW  360
SLVPVKMKKK IEEKYKLLKA DELKVFLLKN EILNDVSSEI SKFD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.8966s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634348.10.0probable transcription factor At4g00610
TrEMBLR0GZX60.0R0GZX6_9BRAS; Uncharacterized protein
STRINGCagra.8966s0005.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00610.13e-34DNA-binding storekeeper protein-related transcriptional regulator