PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.8929s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 299aa    MW: 33966.1 Da    PI: 7.9299
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.8929s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.65e-09116136526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+ f++ G C++Gd+C FaHg
  Cagra.8929s0001.1.p 116 ACPEFRK-GSCRRGDSCEFAHG 136
                          7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.32E-5111140IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-6111137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507112138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-6115138IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-7116136IPR000571Zinc finger, CCCH-type
SMARTSM0035627146169IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.296146170IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061157Biological ProcessmRNA destabilization
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MMIGENNNRP HPTIHIPQWD PTVTISSPFS NGVNDYPHSP SPYLDSFASL HRYLPSNELT  60
EDSDEPSLTD EFRMYEFKIR RCSRGRSHDW TECPYAHPGE KARRRDPRKV HYSGTACPEF  120
RKGSCRRGDS CEFAHGVFEC WLHPSRYRTQ PCKDGTSCRR RICFFAHTTE QLRVLPDPDL  180
GFFSSKLATS PTSILNSPSF SPPSESPPLS PSAGEIIASM RKMQLNGGCS WSSPMRSGVV  240
RLPFSSSLRP IQAPTWPRIR EFEIWESEEE TPAMEFVESG KELRAKMYAR LSRENSLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.8929s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294702.10.0zinc finger CCCH domain-containing protein 23
SwissprotO823071e-168C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBLR0HQM90.0R0HQM9_9BRAS; Uncharacterized protein
STRINGCagra.8929s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.21e-165C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]