PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.8005s0020.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bZIP

Protein Properties

Length: 463aa MW: 51211.6 Da PI: 7.0613

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.8005s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33	1.3e-10	163	191	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka++++Le Cagra.8005s0020.1.p 163 KTLRRLAQNREAARKSRLRKKAYVQQLES 191 7789***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.8E-9	154	207	No hit	No description
SMART	SM00338	4.7E-7	159	247	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.737	161	205	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.7E-8	163	193	IPR004827	Basic-leucine zipper domain
CDD	cd14708	6.05E-23	163	215	No hit	No description
SuperFamily	SSF57959	2.01E-7	163	204	No hit	No description
PROSITE pattern	PS00036	0	166	181	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.8E-30	256	330	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MQGHHQNHHQ HLSSASATSS SHGNFMNKDG YDIGEIDPSL FLYLDGQGHH DPPSTAPSSL 60 PHHYHHTTQN LAMRPPTSTL NIFPSQPMHI EPPPSSTPNT DNARLVPAAQ PSGSTRPSSE 120 PSMDLTNHSQ FQPPPQASKS IKEGNRKGPA SSDHDIPKSS DPKTLRRLAQ NREAARKSRL 180 RKKAYVQQLE SCRIKLTQLE QEIQRARSQG VFFGGSLIGG DQQQGGLPIG PGSISSEAAV 240 FDMEYARWLE EQQRLLTELR VATQEHLAEN ELRMFVDTCL AHYDHLINLK AMVAKTDVFH 300 LISGAWKTPA ERCFLWMGGF RPSEIIKVIV NQIEPLTEQQ IVGICGLQQS TQEAEEALSQ 360 GLEALNQSLS DSIVSDSLSP ASAPLPPHLS NFMSHMSLAL NKLSALEGFV LQADNLRHQT 420 IHRLNQLLTT RQEARCLLAV AEYFHRLQAL SSLWLARPRQ DG*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MQGHHQNHHQ HLSSASATSS SHGNFMNKDG YDIGEIDPSL FLYLDGQGHH DPPSTAPSSL  60
PHHYHHTTQN LAMRPPTSTL NIFPSQPMHI EPPPSSTPNT DNARLVPAAQ PSGSTRPSSE  120
PSMDLTNHSQ FQPPPQASKS IKEGNRKGPA SSDHDIPKSS DPKTLRRLAQ NREAARKSRL  180
RKKAYVQQLE SCRIKLTQLE QEIQRARSQG VFFGGSLIGG DQQQGGLPIG PGSISSEAAV  240
FDMEYARWLE EQQRLLTELR VATQEHLAEN ELRMFVDTCL AHYDHLINLK AMVAKTDVFH  300
LISGAWKTPA ERCFLWMGGF RPSEIIKVIV NQIEPLTEQQ IVGICGLQQS TQEAEEALSQ  360
GLEALNQSLS DSIVSDSLSP ASAPLPPHLS NFMSHMSLAL NKLSALEGFV LQADNLRHQT  420
IHRLNQLLTT RQEARCLLAV AEYFHRLQAL SSLWLARPRQ DG*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00491	DAP	Transfer from AT5G06839	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.8005s0020.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ132742	0.0	HQ132742.1 Arabidopsis thaliana bZIP65 (At5g06839) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023637543.1	0.0	transcription factor TGA10 isoform X6
Swissprot	E3VNM4	0.0	TGA10_ARATH; Transcription factor TGA10
TrEMBL	A0A1J3I3I6	0.0	A0A1J3I3I6_NOCCA; Transcription factor HBP-1b(C1)
STRING	Cagra.8005s0020.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7207	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cagra.8005s0020.1.p

Publications ? help Back to Top
Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]