PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.7160s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 149aa    MW: 16847.8 Da    PI: 7.9192
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.7160s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-073262347
                         -HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                         +W++Ia +++  Rt++++k++w++ 
  Cagra.7160s0001.1.p  3 RWSLIAGRLP-ERTANDVKNYWNTN 26
                         4*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.735131IPR017930Myb domain
PfamPF002491.3E-5327IPR001005SANT/Myb domain
SuperFamilySSF466892.04E-5331IPR009057Homeodomain-like
CDDcd001676.21E-6327No hitNo description
Gene3DG3DSA:1.10.10.602.4E-9327IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MLRWSLIAGR LPERTANDVK NYWNTNLARN YRCCISNRRN RERPCSSMVP APKHNVIRPQ  60
PQSFSNNIGW SSLNNLTTYG TITSNKGKEK CDFFNNQMDG ENMLGKRLLV VSQEEANAVI  120
TIDEEGDTSS IDSMSSTFEN LESLFNAY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.7160s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513542.11e-56PREDICTED: transcription factor MYB114-like
TrEMBLD7KTN64e-41D7KTN6_ARALL; Predicted protein
STRINGCagra.7160s0001.1.p1e-107(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56650.11e-25production of anthocyanin pigment 1