PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6952s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 365aa    MW: 41245.6 Da    PI: 6.7889
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6952s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11153198454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          + +  Er RR + N++f  L++l+P++     +K + a+i+ +A++YIk+L
  Cagra.6952s0001.1.p 153 TTSPTERERRVHFNDRFLDLKKLIPNP-----TKIDRASIVGEAIDYIKEL 198
                          55667**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.83E-14144212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.30E-11144203No hitNo description
Gene3DG3DSA:4.10.280.103.8E-13146209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.091149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-9152198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MIHQMATTHQ QHSDWDNGYQ DFVNMGPNSA TTPDLLSLLH LPRCSLPPPH HPSSMLPNSF  60
SDIMSSSSAA AVMYDPLFHL NFPMQPRDHN QLRNGSCLLG VEDQIQMDAN GGVNMMYFEG  120
GNNNNNDNGG FDNGVLEFNT GVTRKGRRAK KSTTSPTERE RRVHFNDRFL DLKKLIPNPT  180
KIDRASIVGE AIDYIKELLR TIEEFKMLVE KKRFGRFRSK KKARVGQGEG EDQEEEEDTV  240
NYKPQSEIDQ SCFNKNNNNS LRCSWLKRKS KITEVDVRII DDEVTIKLVQ KKKINCLLLT  300
TKVLDQLQLD LHHVAGGQIG EHYSFLFNTK ICEGSCVYAS GIADTVMEIV EKQYMEAAVP  360
SNGY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6952s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2516950.0AF251695.1 Arabidopsis thaliana putative transcription factor BHLH10 mRNA, complete cds.
GenBankAK2285920.0AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03.
GenBankBT0057110.0BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds.
GenBankBT0086080.0BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640475.10.0transcription factor bHLH10
RefseqXP_023640476.10.0transcription factor bHLH10
SwissprotQ84TK10.0BH010_ARATH; Transcription factor bHLH10
TrEMBLR0HNY70.0R0HNY7_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.6952s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]