PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6845s0055.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Nin-like
Protein Properties Length: 415aa    MW: 46556.5 Da    PI: 4.5274
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6845s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK77.41.6e-24318367251
               RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                          +k+++++dls++F+lpi++AAke++vc+Tv+K+iCR  G+kRWP+Rk++s
  Cagra.6845s0055.1.p 318 TKKMKVQDLSMHFHLPIEQAAKEMKVCPTVIKKICRDGGLKRWPYRKLNS 367
                          799*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.642308388IPR003035RWP-RK domain
PfamPF020422.9E-21321367IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
DADEDPYNHP YDGFGWFQNV MDDPNPNLMD MAFTENTSPS MCPPLLPLDV DQTQLFHELD  60
LSISNYDTND DFDVLSFFDD GFTTSLDMLE PLNDGPNENV NNDSQAEITY DYVNDHNNNN  120
VGETTRLEVS TRVFGDPNGP NYEIGGTSTT PVASDKDFAC DCCTMLRELV HMKEGEIMTT  180
LVIYGGIGFI CHAFLHTRLL PSDSTEPQPQ NQPEPQKIHL MDLTMEEVKK FIEDYCSQRL  240
ASGLSLVQDT NAAFYEAMSV NSIFNQSPPM LAPPTSTEAL DVSLVPLNVG RATEEPTAGM  300
QKKKKNPKTP LAAQRERTKK MKVQDLSMHF HLPIEQAAKE MKVCPTVIKK ICRDGGLKRW  360
PYRKLNSRLK KIEALKSVLC TAKSEEVKAH VEAEIERLQR EIETICSDAL KYAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6845s0055.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290056.20.0uncharacterized protein LOC17881222
TrEMBLR0GGC10.0R0GGC1_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.6845s0055.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40762342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.13e-13RWP-RK domain-containing protein