PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6624s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 295aa    MW: 32429.1 Da    PI: 6.8046
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6624s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.6e-144084347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
  Cagra.6624s0006.1.p 40 PWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKY 84
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5813389IPR017930Myb domain
SuperFamilySSF466895.31E-173589IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-183687IPR006447Myb domain, plants
SMARTSM007171.7E-103787IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-113983IPR009057Homeodomain-like
CDDcd001671.75E-94085No hitNo description
PfamPF002493.2E-114084IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
PLSDHARYSS LHHNEGYLSD DPAHGSGSSH RRGERKRGVP WTEEEHRLFL VGLQKLGKGD  60
WRGISRNYVT SRTPTQVASH AQKYFIRHTS SSRRKRRSSL FDMVTDEMVT DSSPTQEDQT  120
VNRSSPSKEP ENKSYLPSLE LSLNNTMEPE AVIATAPPQE KPEEAIEPSN GVSPMLVPGG  180
FFPPCFPVTY TIWLPATSTS LQGTEHALEA ETFSQQHQVL KPKPEFAKER VNMDELVGMS  240
QLSIGMATKH ETETSPSPSP LSLKLEPSRP SAFHSNGSVN GADLSKGNSA IQAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.6624s0006.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195120.0AY519512.1 Arabidopsis thaliana MYB transcription factor (At3g16350) mRNA, complete cds.
GenBankBT0058320.0BT005832.1 Arabidopsis thaliana At3g16350 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297882.10.0transcription factor MYBS3
TrEMBLR0HYV30.0R0HYV3_9BRAS; Uncharacterized protein
STRINGCagra.6624s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-163MYB_related family protein