PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.6594s0027.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WRKY | ||||||||
Protein Properties | Length: 208aa MW: 22770.8 Da PI: 10.2569 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 31.2 | 4.4e-10 | 187 | 207 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 +D ++WrKYGqK++kgs++pr Cagra.6594s0027.1.p 187 SDVWAWRKYGQKPIKGSPYPR 207 69******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-8 | 176 | 207 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.837 | 181 | 207 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-7 | 183 | 207 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-5 | 188 | 207 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MGNLERDVCT KMELGFSGFL IAVRIQRFSA LFCLLWLLSS LLRDSKLLST PELPNSMADD 60 WDLHAVVRGC SAVSSSATTS TTTVFSGGVS SHTNPTFTVG RQSNAVSFGE IRDLYTPFTQ 120 ESVVSSFSCL NYPEEPRKTQ NQKRPLSLSA SSGSVTSKPT GSTTSRSKRR KIQHKKVCHV 180 AAEALNSDVW AWRKYGQKPI KGSPYPR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.6594s0027.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY166720 | 0.0 | AY166720.1 Capsella rubella WRKY transcription factor 22 (WRKY22) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288206.2 | 1e-106 | WRKY transcription factor 22 | ||||
Swissprot | O04609 | 3e-98 | WRK22_ARATH; WRKY transcription factor 22 | ||||
TrEMBL | R0GW21 | 1e-123 | R0GW21_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.6594s0027.1.p | 1e-152 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7810 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 1e-79 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.6594s0027.1.p |