PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.6133s0035.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Trihelix | ||||||||
Protein Properties | Length: 683aa MW: 75861.5 Da PI: 5.9077 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 97.2 | 1.4e-30 | 60 | 144 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laL+++r++m++++r++ lk+plWe+vs+k+ e g++rs+k+Ckek+en++k+yk++ke++++r++++ +++f+qlea Cagra.6133s0035.1.p 60 RWPREETLALLRIRSDMDSTFRDATLKAPLWEHVSRKLLELGYKRSAKKCKEKFENVQKYYKRTKETRGGRHDGK--AYKFFSQLEA 144 8*********************************************************************86555..5******985 PP | |||||||
2 | trihelix | 104.2 | 9.4e-33 | 446 | 530 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k e+laLi++r+ me r++++ k+ lWee+s m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +++ +tcpyf++l+ Cagra.6133s0035.1.p 446 RWPKAEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKR-PQDAKTCPYFHRLD 530 8*********************************************************************8.99999*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.864 | 53 | 117 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0076 | 57 | 119 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 8.16E-27 | 59 | 124 | No hit | No description |
Pfam | PF13837 | 1.1E-20 | 59 | 145 | No hit | No description |
SMART | SM00717 | 0.011 | 443 | 505 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 6.93E-30 | 445 | 510 | No hit | No description |
PROSITE profile | PS50090 | 6.667 | 445 | 503 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 5.9E-22 | 445 | 530 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0030308 | Biological Process | negative regulation of cell growth | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0042631 | Biological Process | cellular response to water deprivation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000037 | Biological Process | regulation of stomatal complex patterning | ||||
GO:2000038 | Biological Process | regulation of stomatal complex development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MEQVGGGGGG NEVVEEASPI SSRPPASNNL EELMRFSAAA DDGGGGGGGG GSASSSSGNR 60 WPREETLALL RIRSDMDSTF RDATLKAPLW EHVSRKLLEL GYKRSAKKCK EKFENVQKYY 120 KRTKETRGGR HDGKAYKFFS QLEALNTTPT PLQPHPHPPS SSLDVTPLSV ANPILMPSSS 180 SSPFPIFSQP QPQTQPPQTH TVSFTPTPLP PPPPMAPTFP GVTFSSHSSS TASGMGSDDD 240 DDDDDMDVDQ ANIAGSSSRK RKRGNRGGGK MMELFEGLVR QVMQKQAAMQ RSFLEALEKR 300 EQERLDREEA WKRQEMSRLA REHEVMAQER AASASRDAAI ISLIQKITGH TIQLPPSLSS 360 QTPQVPPHQP PQPPPAAKRA HQEPQLSTAQ SQLQQPIMAI PQQQILPSPH LPHQPEQKQQ 420 QQQQQQQVQE MIVSSEQSSL LPSSSRWPKA EILALINLRS GMEPRYQDNV PKGLLWEEIS 480 TSMKRMGYNR NAKRCKEKWE NINKYYKKVK ESNKKRPQDA KTCPYFHRLD LLYRNKVLGG 540 SGGGGGSSTS GLPQEQKQSP VSAMKPPQEG LVNVQPHESG SSEEVEPIDQ ESTPQGTEKP 600 EDLVMRELMQ QQQQQQQESM IGEYEKIEES HNYNNMEEEE EEMDEEELDE EEKSAAFEIA 660 FQSPANRGGN GHTEPPFLTM VQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 110 | KRSAKKCKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00177 | DAP | Transfer from AT1G33240 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.6133s0035.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC021045 | 0.0 | AC021045.2 Arabidopsis thaliana chromosome I BAC T9L6 genomic sequence, complete sequence. | |||
GenBank | AC027035 | 0.0 | AC027035.5 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence. | |||
GenBank | AJ003215 | 0.0 | AJ003215.1 Arabidopsis thaliana GTL1 gene. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023645590.1 | 0.0 | trihelix transcription factor GTL1 isoform X1 | ||||
Swissprot | Q9C882 | 0.0 | GTL1_ARATH; Trihelix transcription factor GTL1 | ||||
TrEMBL | R0IRM9 | 0.0 | R0IRM9_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.6133s0035.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6226 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33240.1 | 0.0 | GT-2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.6133s0035.1.p |
Publications ? help Back to Top | |||
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