PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.5954s0021.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

FAR1

Protein Properties

Length: 270aa MW: 30647.4 Da PI: 6.3764

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.5954s0021.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	94.1	1.7e-29	104	191	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++ k r+raetr+gC+a++ ++ke++gkw++tk+++eHnH+l+p Cagra.5954s0021.1.p 104 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFVKEHNHPLMP 191 9****************************************999..999**********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-27	104	191	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MDFRIDNGVA AGMMMGIPVE LEVTTVENHN EMGESSGQAM IEQDDDNHNE MGDNSGQGQA 60 MIEQDEKVNP DSLPLAVAAD MADNQGDEPC VGQEFESEAA AHGFYNAYAT KVGFVIRVSK 120 LSRSRHDGSP IGRQLVCNKE GYRLPSKRDK VIRQRAETRV GCRAMILIRK ENSGKWVITK 180 FVKEHNHPLM PGRVRRGCIY DQYPNEHDKI QELMQQLAAE KKRAATYKRH LEMLFEQIEQ 240 HNESLSKRIQ HIVDNVRNLE HRDQQNHQV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.5954s0021.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY058089	0.0	AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291674.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
TrEMBL	R0FPX5	0.0	R0FPX5_9BRAS; Uncharacterized protein
STRING	Cagra.5954s0021.1.p	0.0	(Capsella grandiflora)
STRING	XP_006291674.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7302	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-176	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Cagra.5954s0021.1.p