PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.5742s0010.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Protein Properties

Length: 263aa MW: 30394.3 Da PI: 8.4092

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.5742s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.9	1.4e-16	125	214	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v+ +l lp +f+++h +k ++ ++tl de+ +++ k+ ++k++ l++GW++F +++L +gD vvF+l+ ++f Cagra.5742s0010.1.p 125 FVKPMLQSHVTGGFWLGLPLRFCKTHL-PK-RDEMMTLVDEEDEEFLAKYLFEKNG----LSGGWRGFSIDHQLLDGDAVVFHLITPTTF 208 89*******************9994.33.5569***********999999....*********************9976666 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v ++r Cagra.5742s0010.1.p 209 --KVYIIR 214 ..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.8E-19	116	215	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.73E-24	118	216	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.92E-25	123	214	No hit	No description
Pfam	PF02362	1.8E-14	125	214	IPR003340	B3 DNA binding domain
SMART	SM01019	4.3E-22	125	216	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.842	125	216	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MVESELSYEQ IRLKRVEENK KRMTELNLNK LAQSLRVSSS PKPSPSKTRT MRMPVDFSEV 60 RRSSRAKGPP PSYKEFGLEP LERPRRSYQR RDLLNRVYAS DEARVYAVDR AEKLQSSLDP 120 EFPSFVKPML QSHVTGGFWL GLPLRFCKTH LPKRDEMMTL VDEEDEEFLA KYLFEKNGLS 180 GGWRGFSIDH QLLDGDAVVF HLITPTTFKV YIIRVNDDGN NDSDVNEEDE EDDIDINKKQ 240 EEHVSEARQL RSSGKRKRGG RK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.5742s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493621	0.0	AB493621.1 Arabidopsis thaliana At3g19184 mRNA for hypothetical protein, partial cds, clone: RAAt3g19184.
GenBank	DQ487561	0.0	DQ487561.1 Arabidopsis thaliana clone 0000004119_0000003454 unknown protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006298352.1	1e-171	B3 domain-containing protein At3g19184
Swissprot	Q1G3M3	1e-144	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	R0I040	1e-169	R0I040_9BRAS; Uncharacterized protein
STRING	Cagra.5742s0010.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-122	B3 family protein

Link Out ? help Back to Top
Phytozome	Cagra.5742s0010.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]