PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.5679s0003.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | FAR1 | ||||||||
Protein Properties | Length: 778aa MW: 87774 Da PI: 6.5092 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 37.9 | 5.8e-12 | 63 | 134 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eY++++GF+ + +++g++ r+fvCs + ++++ + +C+a+++++++ ++kw+vtk+++eH+H la Cagra.5679s0003.2.p 63 SFYDEYSRQLGFTSKSLP----RTDGSVSVREFVCSSKRSKRRLAE--------------SCDAMVRIEMRGQEKWVVTKFVKEHTHGLA 134 5***********876654....55899********98877666554..............5**************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.6E-7 | 64 | 134 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.1E-24 | 266 | 357 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.398 | 544 | 580 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.4E-9 | 549 | 578 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.9E-7 | 555 | 582 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 778 aa Download sequence Send to blast |
MDIHLVEEGL SMGNHGMGDD GDAEPSDCSG TNNIENSLGV QDEIGIAEPC VGMEFSSEKE 60 AKSFYDEYSR QLGFTSKSLP RTDGSVSVRE FVCSSKRSKR RLAESCDAMV RIEMRGQEKW 120 VVTKFVKEHT HGLASPNTLH CLRPRRHFAN SEKSSYQEGV NVPSGMMYVS MDGNRVPLES 180 NSRSSRSALK DSNRGVGTVN YGSMATNTKR TIGRDAHNLL EYFKRMQAEN PGFFYAIQLD 240 EDNQMTNVFW ADSRSRFAYS HFGDTVTLDT RYRCNQFRVP FAPFTGVNHH GQTIIFGCAL 300 ILDESDTSFI WLFKTFLTAM REQPPVSLVT DQDRAIQIAV AQVFPGARHC INKWDVLREG 360 QEKLAHVCLA YPSFQVELYN CINFTETIEE FESSWTSIIE KYDLGRHEWL NSLYNARAQW 420 VPVYFRDSFF AAVFPSHGYS GSFFDGYVNQ QTTLPMFFRL YERAMESWFE MEGEADLDTV 480 NTPPVLKTPS PMENQAANLF TRKIFEKFQE ELVETFAHTA NRIEDDGTTS TFRVAKFEND 540 NKAYIVTFCY PEMRANCSCQ MFEHCGILCR HVLTVFTVTN ILTLPPHYIL RRWTRNAKSM 600 VELDEHINEN GHDSMIHRYN HLCREAIKYA EEGAVTAEAY NVALGALREG GKKVSVVRKN 660 IARAVPPSAH GGGNKTSLSA ADTTPLLWPR QDEMIRRFNL NDGGARAQSV ADLNLPRMAP 720 VSLHRDDGAP ENMVALPCLK SMTWVMESKN TMPGGRVAVI SLKKVSFSGY GGQISAF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.5679s0003.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK317350 | 0.0 | AK317350.1 Arabidopsis thaliana AT2G27110 mRNA, complete cds, clone: RAFL24-16-J02. | |||
GenBank | AY057491 | 0.0 | AY057491.1 Arabidopsis thaliana At2g27110/T20P8.16 mRNA, complete cds. | |||
GenBank | BT002690 | 0.0 | BT002690.1 Arabidopsis thaliana At2g27110/T20P8.16 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023640823.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X2 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | R0HMV5 | 0.0 | R0HMV5_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.5679s0003.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.5679s0003.2.p |
Publications ? help Back to Top | |||
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