PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.5679s0003.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

FAR1

Protein Properties

Length: 867aa MW: 98048.8 Da PI: 6.5437

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.5679s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.7	6.7e-12	63	134	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eY++++GF+ + +++g++ r+fvCs + ++++ + +C+a+++++++ ++kw+vtk+++eH+H la Cagra.5679s0003.1.p 63 SFYDEYSRQLGFTSKSLP----RTDGSVSVREFVCSSKRSKRRLAE--------------SCDAMVRIEMRGQEKWVVTKFVKEHTHGLA 134 5*********876654....55899****98877666554..............5************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-7	64	134	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.9E-24	266	357	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.398	544	580	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.2E-9	549	578	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.9E-7	555	582	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 867 aa Download sequence Send to blast
MDIHLVEEGL SMGNHGMGDD GDAEPSDCSG TNNIENSLGV QDEIGIAEPC VGMEFSSEKE 60 AKSFYDEYSR QLGFTSKSLP RTDGSVSVRE FVCSSKRSKR RLAESCDAMV RIEMRGQEKW 120 VVTKFVKEHT HGLASPNTLH CLRPRRHFAN SEKSSYQEGV NVPSGMMYVS MDGNRVPLES 180 NSRSSRSALK DSNRGVGTVN YGSMATNTKR TIGRDAHNLL EYFKRMQAEN PGFFYAIQLD 240 EDNQMTNVFW ADSRSRFAYS HFGDTVTLDT RYRCNQFRVP FAPFTGVNHH GQTIIFGCAL 300 ILDESDTSFI WLFKTFLTAM REQPPVSLVT DQDRAIQIAV AQVFPGARHC INKWDVLREG 360 QEKLAHVCLA YPSFQVELYN CINFTETIEE FESSWTSIIE KYDLGRHEWL NSLYNARAQW 420 VPVYFRDSFF AAVFPSHGYS GSFFDGYVNQ QTTLPMFFRL YERAMESWFE MEGEADLDTV 480 NTPPVLKTPS PMENQAANLF TRKIFEKFQE ELVETFAHTA NRIEDDGTTS TFRVAKFEND 540 NKAYIVTFCY PEMRANCSCQ MFEHCGILCR HVLTVFTVTN ILTLPPHYIL RRWTRNAKSM 600 VELDEHINEN GHDSMIHRYN HLCREAIKYA EEGAVTAEAY NVALGALREG GKKVSVVRKN 660 IARAVPPSAH GGGNKTSLSA ADTTPLLWPR QDEMIRRFNL NDGGARAQSV ADLNLPRMAP 720 VSLHRDDGAP ENMVALPCLK SMTWVMESKN TMPGGRVAVI SLKLHDYRKF PSADMEVKFQ 780 LSSVTLEPML RSMAYISEQL SSPANRVAVI NLKLQDTETT TGESEVKFQV SRDTLGAMLR 840 SMAYIREQLS IVGELQTEPQ AKKQRK*

Sequence ? help Back to Top

Protein Sequence Length: 867 aa Download sequence Send to blast

MDIHLVEEGL SMGNHGMGDD GDAEPSDCSG TNNIENSLGV QDEIGIAEPC VGMEFSSEKE  60
AKSFYDEYSR QLGFTSKSLP RTDGSVSVRE FVCSSKRSKR RLAESCDAMV RIEMRGQEKW  120
VVTKFVKEHT HGLASPNTLH CLRPRRHFAN SEKSSYQEGV NVPSGMMYVS MDGNRVPLES  180
NSRSSRSALK DSNRGVGTVN YGSMATNTKR TIGRDAHNLL EYFKRMQAEN PGFFYAIQLD  240
EDNQMTNVFW ADSRSRFAYS HFGDTVTLDT RYRCNQFRVP FAPFTGVNHH GQTIIFGCAL  300
ILDESDTSFI WLFKTFLTAM REQPPVSLVT DQDRAIQIAV AQVFPGARHC INKWDVLREG  360
QEKLAHVCLA YPSFQVELYN CINFTETIEE FESSWTSIIE KYDLGRHEWL NSLYNARAQW  420
VPVYFRDSFF AAVFPSHGYS GSFFDGYVNQ QTTLPMFFRL YERAMESWFE MEGEADLDTV  480
NTPPVLKTPS PMENQAANLF TRKIFEKFQE ELVETFAHTA NRIEDDGTTS TFRVAKFEND  540
NKAYIVTFCY PEMRANCSCQ MFEHCGILCR HVLTVFTVTN ILTLPPHYIL RRWTRNAKSM  600
VELDEHINEN GHDSMIHRYN HLCREAIKYA EEGAVTAEAY NVALGALREG GKKVSVVRKN  660
IARAVPPSAH GGGNKTSLSA ADTTPLLWPR QDEMIRRFNL NDGGARAQSV ADLNLPRMAP  720
VSLHRDDGAP ENMVALPCLK SMTWVMESKN TMPGGRVAVI SLKLHDYRKF PSADMEVKFQ  780
LSSVTLEPML RSMAYISEQL SSPANRVAVI NLKLQDTETT TGESEVKFQV SRDTLGAMLR  840
SMAYIREQLS IVGELQTEPQ AKKQRK*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.5679s0003.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317350	0.0	AK317350.1 Arabidopsis thaliana AT2G27110 mRNA, complete cds, clone: RAFL24-16-J02.
GenBank	AY057491	0.0	AY057491.1 Arabidopsis thaliana At2g27110/T20P8.16 mRNA, complete cds.
GenBank	BT002690	0.0	BT002690.1 Arabidopsis thaliana At2g27110/T20P8.16 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006293662.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	R0HMV5	0.0	R0HMV5_9BRAS; Uncharacterized protein
STRING	Cagra.5679s0003.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Cagra.5679s0003.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]