PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5647s0054.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 302aa    MW: 35471.1 Da    PI: 9.3649
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5647s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.8e-0999124227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C f+ +   C yG+ C+F+H+p
  Cagra.5647s0054.1.p  99 GEPICEFYKKHRLCGYGSECRFHHPP 124
                          579*********************97 PP
2zf-CCCH32.51.5e-10135158327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           + C++f + G+Ck+G+ CkF+H++
  Cagra.5647s0054.1.p 135 KPDCKYFKA-GYCKRGSDCKFNHPK 158
                          689**7777.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.82197125IPR000571Zinc finger, CCCH-type
SMARTSM003560.006397124IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-699124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.741132159IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6133158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6134157IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-8135158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4138158IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEETKLKNIA NVSLTFDSQR QTPELKLDEL RIRSDERKGR RQEPQSEKME KEDSGFGASE  60
DGEIPNEEHP DADSYVVMLR RSNGIREHAL SGAYPIRTGE PICEFYKKHR LCGYGSECRF  120
HHPPLHELPD MSDQKPDCKY FKAGYCKRGS DCKFNHPKEK DAAENVLFND PAGLPMRKGK  180
TPSLRPNDSE RRYEREARSR QEMRVRELNK NSRPQTKIQD RRGMTKTRER CRELDLHKQA  240
QEARKIWIEL ERRAARIKLD QMRPTVTFDD WIQAIKGMAE MGFTDFHGSN LGKWRWIFWR  300
T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.5647s0054.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019091066.12e-56PREDICTED: putative zinc finger CCCH domain-containing protein 10
SwissprotQ9C7P12e-61C3H10_ARATH; Putative zinc finger CCCH domain-containing protein 10
TrEMBLA0A1P8AM374e-52A0A1P8AM37_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGCagra.5647s0054.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1791568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29600.12e-55C3H family protein