PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G29600.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 389aa    MW: 45579 Da    PI: 9.6571
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G29600.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.5e-071731891127
                  GTS--TTTTT-SS-SSS CS
      zf-CCCH  11 rtGtCkyGdrCkFaHgp 27 
                  + G Ck+G++C+F+H++
  AT1G29600.1 173 KAGACKRGSNCPFNHPK 189
                  67*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.77131157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.385158190IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4173189IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0009025anatomyvascular leaf
PO:0009047anatomystem
PO:0020030anatomycotyledon
PO:0007115developmental stageLP.04 four leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MANVSFTFDS QEQNKELRPS RLVGRSDERN GRRQGTEQKK KEKEDSGFRV SEEGEIPLQQ  60
GSNTDSYARD DLTQQQRVSD VVMQRRSHET ESRLWQRART QDRRGSESRM MFDGRTQWSH  120
APVLSSAYPV RPGEDNCLFY MKNHLCEWGS ECCYNHPPLQ EIPCRIGKKL DCKAGACKRG  180
SNCPFNHPKE RDGDSLPMPQ GRTPDLRRND SGRRYNTESR SWPENKEKEV GQFRDHQDSK  240
EDAQEVLLQQ RPRDVEMRKR SRSPDFRAKT ETKEHREAEE RSSRESATAT GKVSGKENEL  300
RPTYVYLLMM PENHNVDVQQ TLQEQRKRNI KKARIEARLK LDQIRPTVVL ENSRATKMMI  360
EWGFTDFRKL QGSNLGNKKW ICWVRKHCC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330339KKARIEARLK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO3341829410.0
Genevisible257507_at0.0
Expression AtlasAT1G29600-
AtGenExpressAT1G29600-
ATTED-IIAT1G29600-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G29600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G29600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0686671e-121AC068667.6 Arabidopsis thaliana chromosome 1 BAC F15D2 genomic sequence, complete sequence.
GenBankCP0026841e-121CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001320176.10.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ9C7P10.0C3H10_ARATH; Putative zinc finger CCCH domain-containing protein 10
TrEMBLA0A178WMN90.0A0A178WMN9_ARATH; Uncharacterized protein
STRINGAT1G29600.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1791568
Publications ? help Back to Top
  1. Schmid M, et al.
    A gene expression map of Arabidopsis thaliana development.
    Nat. Genet., 2005. 37(5): p. 501-6
    [PMID:15806101]
  2. Deleu W, et al.
    Structure of two melon regions reveals high microsynteny with sequenced plant species.
    Mol. Genet. Genomics, 2007. 278(6): p. 611-22
    [PMID:17665215]
  3. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  4. Hanada K, et al.
    Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
    Mol. Biol. Evol., 2011. 28(1): p. 377-82
    [PMID:20736450]