PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.5641s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 249aa MW: 28845.4 Da PI: 8.5938 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 43 | 1.5e-13 | 18 | 64 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 lppGfrFhP+d+elv++yL ++++++ + v+ evd++k++Pwd+p Cagra.5641s0060.1.p 18 LPPGFRFHPRDDELVCDYLLRRTSRNLYQP-VVLIEVDLNKCDPWDIP 64 79********************99999777.6899***********98 PP | |||||||
2 | NAM | 52.7 | 1.5e-16 | 66 | 107 | 86 | 128 |
NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkd+ + + +g+lvg++ktLvfy+grapkg+ktdWvmhe++l Cagra.5641s0060.1.p 66 TGKDRVIQR-NGRLVGMRKTLVFYRGRAPKGRKTDWVMHEFHL 107 899999988.99******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.037 | 1 | 131 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.84E-38 | 11 | 132 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-14 | 19 | 107 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MENKEEKKGF ISMVEANLPP GFRFHPRDDE LVCDYLLRRT SRNLYQPVVL IEVDLNKCDP 60 WDIPPTGKDR VIQRNGRLVG MRKTLVFYRG RAPKGRKTDW VMHEFHLQGL LLHHPRNYLK 120 EEWVLCRVFH KNNNIADRDD NTSGSDETTT TLMESNYINF DYDNIIKQHV SCFSNLSHNQ 180 INGNQSSLVS KNSNSLYNAS SDQMVLRTLL NQFTKNVEKS QSYREGSSSE SQLRTLAFQA 240 THRITDYG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-28 | 14 | 133 | 11 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.5641s0060.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002882799.1 | 1e-118 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 2e-79 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A1J3GCU0 | 1e-119 | A0A1J3GCU0_NOCCA; NAC domain-containing protein 21/22 | ||||
STRING | Cagra.5641s0060.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 1e-111 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.5641s0060.1.p |