PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5341s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 159aa    MW: 17357.7 Da    PI: 9.0244
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5341s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.78e-1590136151
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                          ++ykGVr+++ +g W AeI+dps    + r +lg+f tae+Aa a+  a+ 
  Cagra.5341s0001.1.p  90 KKYKGVRQKP-SGTWSAEIWDPSL---KVRRWLGTFPTAEMAAHAYNDAAA 136
                          59******99.7*********943...5999***************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.11E-1890126No hitNo description
SMARTSM003804.2E-2391154IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1491142IPR016177DNA-binding domain
PfamPF008472.2E-791135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2191145IPR001471AP2/ERF domain
PROSITE profilePS5103218.22891148IPR001471AP2/ERF domain
PRINTSPR003671.0E-692103IPR001471AP2/ERF domain
PRINTSPR003671.0E-6114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDSRNVPSYD QDSNMVTPCL TRDQEHVIMV SALRQVMISN SGGRDSTTSS TCESRLPPLD  60
AGPCPLCGIT GCYGCVFPRH GDHIVKKDQK KYKGVRQKPS GTWSAEIWDP SLKVRRWLGT  120
FPTAEMAAHA YNDAAAGLVG SKGKRKYAST KKTTVEDY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.5341s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299230.11e-114ethylene-responsive transcription factor ERF120
SwissprotQ9SK674e-63EF120_ARATH; Ethylene-responsive transcription factor ERF120
TrEMBLR0I6R71e-113R0I6R7_9BRAS; Uncharacterized protein
STRINGCagra.5341s0001.1.p1e-116(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20350.12e-65ERF family protein