PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5055s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 324aa    MW: 35838.1 Da    PI: 10.2093
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5055s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87e-31256313359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++++++++tYegeHnh+
  Cagra.5055s0003.1.p 256 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDETSMLIVTYEGEHNHS 313
                          9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.2E-15215252IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.7E-33242314IPR003657WRKY domain
PROSITE profilePS5081129.471249315IPR003657WRKY domain
SuperFamilySSF1182901.2E-26252313IPR003657WRKY domain
SMARTSM007745.5E-37254314IPR003657WRKY domain
PfamPF031061.8E-26256312IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEEVEAANKA AVESCHGVLN ILSQQTNVSL MVETREAILK FKRVSSLLSI GLGQRKIKKL  60
NNNYKFSASL LPQHMFLESP ISGCVPILAP KPLQVVPASH PSLMLFNQKM CVDKSFLELK  120
PPSFRIVDPK PYQFIHSQQQ GVYSRSKSGL NLKFDGSSGG SGSCYSPSIS NGSRSFVSSL  180
SMDHTVTDYD RSSFHLIGLP QGSDHMSQHS RRTSCSGSLK CASRSKCHCS KKRKLRVKRS  240
IKVPAISNKI ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERCVDETS  300
MLIVTYEGEH NHSRIPSSQS AHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-21247316775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.5055s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4262550.0AF426255.1 Arabidopsis thaliana WRKY transcription factor 74 (WRKY74) mRNA, complete cds.
GenBankAF4423980.0AF442398.1 Arabidopsis thaliana WRKY transcription factor 74 (WRKY74) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288217.10.0probable WRKY transcription factor 74
SwissprotQ93WU60.0WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLR0H8890.0R0H889_9BRAS; Uncharacterized protein
STRINGCagra.5055s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38852359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-177WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]