PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.4849s0008.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NAC

Protein Properties

Length: 492aa MW: 56452.9 Da PI: 4.9273

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.4849s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.9	5.4e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgk Cagra.4849s0008.1.p 6 LPPGFRFHPTDEELITYYLKRKINGREIEL-EIISEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGK 94 79**************************.99***********6345667999**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++v +++++g+kktLv+y+grap+g +t Wvmheyrl Cagra.4849s0008.1.p 95 DRRVSW-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 *9.8899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-62	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	61.079	6	157	IPR003441	NAC domain
Pfam	PF02365	4.5E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0090602	Biological Process	sieve element enucleation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIISE VDLYKCEPWD LPGKSLLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDETECEP SAFGMQDAYA LCRVFKKIVI ETKPRDQHQQ QQHQPYVHCS 180 SNLSGNSSFD VSSDLEISSN TQQVLPYSNI TDTQPRMGNA NSISVHDDWS QYLSQDMPSS 240 FSGYGQYLTQ SKVNTDQECE MLQHQMSLPP LRVENSPVQA IDLSNRLNQN GGFDDFTFAP 300 SNSNQFSNVD DHLIHIGNLD DQLLNAGNMS SWMTMSNENL NQSFIEEEEI LPSFERNDQD 360 LDHYYGGSPT NTINNIEIDD FFSFENDVED HDNSNITLNS SGVGMIEEEI VVNHKMLICT 420 RQTAETLYYQ VVPSQLLKIH ISPVQGTEER AMLMDEGNDS WFQKAENVAK MKLKQISLVA 480 KRYYKCLTIV F*

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIISE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDETECEP SAFGMQDAYA LCRVFKKIVI ETKPRDQHQQ QQHQPYVHCS  180
SNLSGNSSFD VSSDLEISSN TQQVLPYSNI TDTQPRMGNA NSISVHDDWS QYLSQDMPSS  240
FSGYGQYLTQ SKVNTDQECE MLQHQMSLPP LRVENSPVQA IDLSNRLNQN GGFDDFTFAP  300
SNSNQFSNVD DHLIHIGNLD DQLLNAGNMS SWMTMSNENL NQSFIEEEEI LPSFERNDQD  360
LDHYYGGSPT NTINNIEIDD FFSFENDVED HDNSNITLNS SGVGMIEEEI VVNHKMLICT  420
RQTAETLYYQ VVPSQLLKIH ISPVQGTEER AMLMDEGNDS WFQKAENVAK MKLKQISLVA  480
KRYYKCLTIV F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-54	4	157	18	168	NAC domain-containing protein 19
3swm_B	1e-54	4	157	18	168	NAC domain-containing protein 19
3swm_C	1e-54	4	157	18	168	NAC domain-containing protein 19
3swm_D	1e-54	4	157	18	168	NAC domain-containing protein 19
3swp_A	1e-54	4	157	18	168	NAC domain-containing protein 19
3swp_B	1e-54	4	157	18	168	NAC domain-containing protein 19
3swp_C	1e-54	4	157	18	168	NAC domain-containing protein 19
3swp_D	1e-54	4	157	18	168	NAC domain-containing protein 19
4dul_A	1e-54	1	157	12	165	NAC domain-containing protein 19
4dul_B	1e-54	1	157	12	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.4849s0008.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB005238	1e-114	AB005238.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKP11.
GenBank	CP002688	1e-114	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006290189.1	0.0	NAC domain-containing protein 86 isoform X1
Swissprot	Q9FFI5	0.0	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	R0FKW5	0.0	R0FKW5_9BRAS; Uncharacterized protein
STRING	Cagra.4849s0008.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	0.0	NAC domain containing protein 86

Link Out ? help Back to Top
Phytozome	Cagra.4849s0008.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]