PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4849s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 391aa    MW: 43265.3 Da    PI: 8.6855
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4849s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-165599147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r rWT +E++++v+a k++G   W++I +++g ++t+ q++s+ qk+
  Cagra.4849s0004.1.p 55 RERWTDDEHKKFVEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 99
                         78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-1649104IPR009057Homeodomain-like
PROSITE profilePS5129419.68650104IPR017930Myb domain
TIGRFAMsTIGR015571.5E-1653102IPR006447Myb domain, plants
SMARTSM007171.5E-1254102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-85595IPR009057Homeodomain-like
PfamPF002492.4E-135598IPR001005SANT/Myb domain
CDDcd001671.81E-957100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MASSPLTANV QGAKSPSKNR VEETADKQNQ FKDKCFGGND YAPKVRKPYT ITKERERWTD  60
DEHKKFVEAL KLYGRAWRRI EEHVGTKTAV QIRSHAQKFF SKVAREATGG DGSSVEPIVI  120
PPPRPKRKPT HPYPRKFGNE ADRTSRSVSP SERENRSPTS VLSNVGSEAL GSLDSSSPNR  180
SLSPVSSASP PAALTTTANA PEEHETLKLE LFPKESLLNT ESSVKEPTKQ SLKLFGKTVL  240
VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNGQ EDLLSCWIQV PLKQEDVENR  300
CLDSGKAVQN EGSSTGSNSG SVDDTGHTDK TSEPETMVCQ WEFKPSERSA FSELRRTNSE  360
SNARGFGPYK KRKMMIEEEE EEEQEIHLHL *
Functional Description ? help Back to Top
Source Description
UniProtMorning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4849s0004.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3788600.0AF378860.1 Arabidopsis thaliana AT5g17300/MKP11_15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287913.10.0protein REVEILLE 1
SwissprotF4KGY60.0RVE1_ARATH; Protein REVEILLE 1
TrEMBLR0FFU00.0R0FFU0_9BRAS; Uncharacterized protein
STRINGCagra.4849s0004.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63562644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.10.0MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Xu G, et al.
    REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis.
    Photosyn. Res., 2015. 126(2-3): p. 331-40
    [PMID:25910753]
  3. Jiang Z,Xu G,Jing Y,Tang W,Lin R
    Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12377
    [PMID:27506149]