PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4497s0014.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 239aa    MW: 26952.9 Da    PI: 9.9797
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4497s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT eEd +l+  vk++G+g+W + a++ g+ R++ +c++rw +yl
  Cagra.4497s0014.1.p 14 KGEWTDEEDRKLAAFVKEHGSGHWGSLAKKAGLQRCGRSCRLRWMNYL 61
                         799*******************************************97 PP
2Myb_DNA-binding46.48.8e-1567110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++++ E++++ + +++ G++ W+ Ia++++ +Rt+ ++k++w++
  Cagra.4497s0014.1.p  67 RGKFSPHEEQQIFKFHALIGNR-WAVIAKHIP-NRTDHDIKNYWNS 110
                          89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.411961IPR017930Myb domain
SuperFamilySSF466891.97E-2811108IPR009057Homeodomain-like
SMARTSM007173.2E-131363IPR001005SANT/Myb domain
PfamPF002494.9E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-221568IPR009057Homeodomain-like
CDDcd001671.04E-101661No hitNo description
PROSITE profilePS5129422.26362116IPR017930Myb domain
SMARTSM007172.0E-1466114IPR001005SANT/Myb domain
PfamPF002499.4E-1467110IPR001005SANT/Myb domain
CDDcd001675.11E-969112No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2469116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRMTWFDDE GMKKGEWTDE EDRKLAAFVK EHGSGHWGSL AKKAGLQRCG RSCRLRWMNY  60
LSPDIKRGKF SPHEEQQIFK FHALIGNRWA VIAKHIPNRT DHDIKNYWNS RLKKRLAKER  120
NKPATTHEPA ATSPSPTPST TTTSSSSSFF CSTGSARLLN KLATGIASRK YRLDKIKMVI  180
LQPRKASGKE KMLITMEEED LIACFMDIDE RLMSTTPFCE GSTATTTSLV AFDDCSIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4497s0014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546089e-52AC254608.1 Capsella rubella clone CAP16-D12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285337.11e-158transcription factor WER
SwissprotQ9LE631e-53MY106_ARATH; Transcription factor MYB106
TrEMBLR0H0U21e-156R0H0U2_9BRAS; Uncharacterized protein
STRINGCagra.4497s0014.1.p1e-179(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.15e-85myb domain protein 95