PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.4395s0212.2.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

FAR1

Protein Properties

Length: 680aa MW: 77473 Da PI: 7.5639

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.4395s0212.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.3	6.8e-20	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 +fY+++Ak++GFs+r+++++ + + t+r fvC + g++ ++ ++ k +r+r ++r+gC+a l+++k + + +w vt + ++Hn Cagra.4395s0212.2.p 62 EFYSTFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTLSEGKPQRNRRSSRCGCQAYLRISKITelgSTEWLVTGFANHHN 151 6************9998877356667999*********999999*****************9989999******** PP FAR1 87 Hela 90 Hel Cagra.4395s0212.2.p 152 HELL 155 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-16	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.9E-20	278	367	IPR018289	MULE transposase domain
Pfam	PF04434	1.8E-8	553	587	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.742	556	589	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.2E-7	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MSDDAGQMLL IYDDPSDQRS LSLEDASSTE ESPDGTTLSL EAVHDAIPYN GQRFLTHDAA 60 YEFYSTFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTLSE GKPQRNRRSS 120 RCGCQAYLRI SKITELGSTE WLVTGFANHH NHELLEPNQV RFLPAYRSIS DADKSRILMF 180 SKTGISVQQM MKLMELEKCV EPGFLPFTEK DVRNLLQSFK KLDPEDENID FLRMCQSIKE 240 KDPNFKFEFT LDANDKLENI AWSYASSIQS YEIFGDAVVF DTTHRLSAVE MPLGIWVGVN 300 NYGVPCFFGC VLLRDENLRS WSWALQAFIG FMNGKAPQTI LTDNNMCLKE AIAGEMPTTK 360 HALCIWMVVG KFPSWFNAGL GERYNDWKAE FYRLYHLESV EEFELGWRDM VNSFGLHTNR 420 HINNLYASRS LWSLPYLRSH FLAGMTLTGR SKAINAFIQR FLSAQTRLAH FVEQVAVAVD 480 FKDQATEQQT MQQNLQNISL KTGAPMESHA ASVLTPFAFS KLQEQLVLAA HYASFQMDDG 540 YLVRHHTKLD GGRKVYWVPQ EGIISCSCQL FEFSGFLCRH ALRVLSTGNC FQVPDRYLPL 600 RWRRISTSFS KTFRSNAEDH GERVQLLQNL VSTLVSESAK SKERLDIATE QTSILLSRIR 660 EQPVSSLALR DISSVQRNF*

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MSDDAGQMLL IYDDPSDQRS LSLEDASSTE ESPDGTTLSL EAVHDAIPYN GQRFLTHDAA  60
YEFYSTFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTLSE GKPQRNRRSS  120
RCGCQAYLRI SKITELGSTE WLVTGFANHH NHELLEPNQV RFLPAYRSIS DADKSRILMF  180
SKTGISVQQM MKLMELEKCV EPGFLPFTEK DVRNLLQSFK KLDPEDENID FLRMCQSIKE  240
KDPNFKFEFT LDANDKLENI AWSYASSIQS YEIFGDAVVF DTTHRLSAVE MPLGIWVGVN  300
NYGVPCFFGC VLLRDENLRS WSWALQAFIG FMNGKAPQTI LTDNNMCLKE AIAGEMPTTK  360
HALCIWMVVG KFPSWFNAGL GERYNDWKAE FYRLYHLESV EEFELGWRDM VNSFGLHTNR  420
HINNLYASRS LWSLPYLRSH FLAGMTLTGR SKAINAFIQR FLSAQTRLAH FVEQVAVAVD  480
FKDQATEQQT MQQNLQNISL KTGAPMESHA ASVLTPFAFS KLQEQLVLAA HYASFQMDDG  540
YLVRHHTKLD GGRKVYWVPQ EGIISCSCQL FEFSGFLCRH ALRVLSTGNC FQVPDRYLPL  600
RWRRISTSFS KTFRSNAEDH GERVQLLQNL VSTLVSESAK SKERLDIATE QTSILLSRIR  660
EQPVSSLALR DISSVQRNF*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.4395s0212.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF424595	0.0	AF424595.1 Arabidopsis thaliana At1g10240/F14N23_12 mRNA, complete cds.
GenBank	BT000486	0.0	BT000486.1 Arabidopsis thaliana unknown protein (At1g10240/F14N23_12) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006304862.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_023632540.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_023632541.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	R0IH94	0.0	R0IH94_9BRAS; Uncharacterized protein
STRING	Cagra.4395s0212.1.p	0.0	(Capsella grandiflora)
STRING	XP_006304862.1	0.0	(Capsella rubella)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Cagra.4395s0212.2.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]