PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cagra.4395s0212.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 680aa MW: 77473 Da PI: 7.5639 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63.3 | 6.8e-20 | 62 | 155 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 +fY+++Ak++GFs+r+++++ + + t+r fvC + g++ ++ ++ k +r+r ++r+gC+a l+++k + + +w vt + ++Hn Cagra.4395s0212.1.p 62 EFYSTFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTLSEGKPQRNRRSSRCGCQAYLRISKITelgSTEWLVTGFANHHN 151 6**************9998877356667999*************999999*********************9989999************ PP FAR1 87 Hela 90 Hel Cagra.4395s0212.1.p 152 HELL 155 **96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.0E-16 | 62 | 155 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.9E-20 | 278 | 367 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.8E-8 | 553 | 587 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.742 | 556 | 589 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 9.2E-7 | 564 | 591 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 680 aa Download sequence Send to blast |
MSDDAGQMLL IYDDPSDQRS LSLEDASSTE ESPDGTTLSL EAVHDAIPYN GQRFLTHDAA 60 YEFYSTFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTLSE GKPQRNRRSS 120 RCGCQAYLRI SKITELGSTE WLVTGFANHH NHELLEPNQV RFLPAYRSIS DADKSRILMF 180 SKTGISVQQM MKLMELEKCV EPGFLPFTEK DVRNLLQSFK KLDPEDENID FLRMCQSIKE 240 KDPNFKFEFT LDANDKLENI AWSYASSIQS YEIFGDAVVF DTTHRLSAVE MPLGIWVGVN 300 NYGVPCFFGC VLLRDENLRS WSWALQAFIG FMNGKAPQTI LTDNNMCLKE AIAGEMPTTK 360 HALCIWMVVG KFPSWFNAGL GERYNDWKAE FYRLYHLESV EEFELGWRDM VNSFGLHTNR 420 HINNLYASRS LWSLPYLRSH FLAGMTLTGR SKAINAFIQR FLSAQTRLAH FVEQVAVAVD 480 FKDQATEQQT MQQNLQNISL KTGAPMESHA ASVLTPFAFS KLQEQLVLAA HYASFQMDDG 540 YLVRHHTKLD GGRKVYWVPQ EGIISCSCQL FEFSGFLCRH ALRVLSTGNC FQVPDRYLPL 600 RWRRISTSFS KTFRSNAEDH GERVQLLQNL VSTLVSESAK SKERLDIATE QTSILLSRIR 660 EQPVSSLALR DISSVQRNF* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cagra.4395s0212.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF424595 | 0.0 | AF424595.1 Arabidopsis thaliana At1g10240/F14N23_12 mRNA, complete cds. | |||
GenBank | BT000486 | 0.0 | BT000486.1 Arabidopsis thaliana unknown protein (At1g10240/F14N23_12) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006304862.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
Refseq | XP_023632540.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
Refseq | XP_023632541.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | R0IH94 | 0.0 | R0IH94_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4395s0212.1.p | 0.0 | (Capsella grandiflora) | ||||
STRING | XP_006304862.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1765 | 26 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cagra.4395s0212.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|