PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4395s0155.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 588aa    MW: 62836.7 Da    PI: 9.2263
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4395s0155.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.28.8e-09197241144
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 
                          r++W++eEde l  avk+ G g+W+ I +       Rt+ q+  rw
  Cagra.4395s0155.1.p 197 RKKWSAEEDEELFAAVKRCGEGNWAHIVKgdFR-GERTASQLSQRW 241
                          789***********************9652134.478888887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.745192249IPR017930Myb domain
SuperFamilySSF466897.9E-12194247IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-12194246IPR009057Homeodomain-like
SMARTSM007172.4E-9196247IPR001005SANT/Myb domain
PfamPF002491.5E-6197241IPR001005SANT/Myb domain
CDDcd116602.38E-14198246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MVDSSSYSRK IIITEGDITS LLQRYDMKTI LRMLQEMAYY SEFKMDWNEL VKKTTTGITN  60
AREYQLLWRH LSYREPLLPV EDDAQPLDDD SDMECELEAS PAVSHEASVE AIAHVKVMAT  120
SYVPSESDIL DDSTVEAPLT INIPYVLPEG TKEPSESPWS SRGMNITFPV CLQKSTSTER  180
VNGNNSACSS MAFRRKRKKW SAEEDEELFA AVKRCGEGNW AHIVKGDFRG ERTASQLSQR  240
WALIRKRCHT STMISSCGIT ETQVIGASSS QGQQQSKPVV LALPRAATSV PASKSRVVKK  300
TTAHSISRLD LMVTANSVAV AACTGGVSAA ASVPKVEPKK TYAPLVPKTE PVKIASTACM  360
PQPSGSLSVP KVEPGTNVTS SSIIKAVGPT NALPLAIGEF KPVTALSSSN KCPLMAPRSA  420
GSTMLSASAP CASESSIVYN QRVFATSVPA IVLQLKPAAK IVTCKPDGGQ KEQARVNGAS  480
SSAAIQPNQM TSTNSEISRE KQATQVQSLN LLPRKIPVVQ TAVHGDTNKN LVDKPSDKTV  540
IPSVRGAGSQ SKAKCEINNK VGQAIKVSGV CGQSPKVATV AGTRQGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194198RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4395s0155.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545830.0AC254583.1 Capsella rubella clone JGIBSIA-25G5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644575.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC17898831
TrEMBLD7KJT30.0D7KJT3_ARALL; DNA binding protein
STRINGCagra.4395s0155.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.10.0MYB_related family protein