PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4247s0012.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 760aa    MW: 80769.9 Da    PI: 10.0414
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4247s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.9e-11203232130
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                          r++W++eEde l+ avk++G g+W++Ia++
  Cagra.4247s0012.1.p 203 RKKWSAEEDEELIAAVKRHGEGSWALIAKE 232
                          789*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-13198244IPR009057Homeodomain-like
PROSITE profilePS5129413.513198252IPR017930Myb domain
SuperFamilySSF466891.72E-9199244IPR009057Homeodomain-like
SMARTSM007174.4E-5202249IPR001005SANT/Myb domain
PfamPF002495.3E-9203232IPR001005SANT/Myb domain
CDDcd116603.59E-11204245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MVDNSNNKKR KEFISEADIA TLLERYDTMT ILRLLQEMAY YADTKMDWNE LVKKTSTGIT  60
NAREYQLLWR HLAYRDSLLP VEDNTQLMGI VTVSWENDDS DMECELEASP AVSVDIVTEA  120
VAHVKVMASS YVPSESDIPE DSTVEAPMTI NIPYCLPRGA QEPSDSFWSS RGMNITFPVS  180
LPKAAEGHNG NGLASSMAPR KRRKKWSAEE DEELIAAVKR HGEGSWALIA KEEFEGERTP  240
SQLSQVLISL GCYCFLVFLI SLNYLQKHYA FFPVYVSYAW SFFTITCREL FRSHRVMRWG  300
AIRRRCDTSN TSTQTGIQRT EAQMAANRAL SLAVGNRLPS KKLAVGTPPM LSSGTITGAQ  360
ANGANSGSTL QGQQQSQPQV QALPRPAASA SSIKSRVPGK KTTTNSSSRV ELMVTANSAA  420
AAACMSGLAT AVSVPKTEPG KNNVSALVPK VEPVKTTSTA SLPRPSGISS VLNAEPIKTV  480
SAASVPRPLG IVSAPKVEPV KTAASAASLP RPSASLPRPS GIVISPPRAA PVKTAPAASL  540
PRPSNILSAP KAEPVKSVSA TASNTKAVGP VNLRQSVNGS SNHVISSSPS NKPSLMAPLP  600
KGSTIQNNSV PPSFASSRLA PTQRVPAATV MPQKPSVGAA VAAVSKPVGV QKQQTQGNRA  660
SSLATTALPL NKTLPTNSVI STSNVVATQV ETPSLMPKKN QVVGSCTDKI LLDKPPEKES  720
STTTTPLVVA AAESKSKDEA SHRESQDVAA VTGTRQKEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4247s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171280.0AK117128.1 Arabidopsis thaliana At1g58220 mRNA for putative MYB-family transcription factor, complete cds, clone: RAFL16-66-J10.
GenBankAY5195470.0AY519547.1 Arabidopsis thaliana MYB transcription factor (At1g58220) mRNA, complete cds.
GenBankBT0059710.0BT005971.1 Arabidopsis thaliana At1g58220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511098.10.0PREDICTED: mucin-5AC-like isoform X1
TrEMBLQ9C5480.0Q9C548_ARATH; Myb-family transcription factor, putative
STRINGCagra.4247s0012.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.10.0MYB_related family protein