PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4237s0016.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | FAR1 | ||||||||
Protein Properties | Length: 711aa MW: 82106.2 Da PI: 6.6329 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69 | 1.1e-21 | 100 | 183 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+evGF+vr+++s ++r++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ l+HnH l Cagra.4237s0016.1.p 100 NYYNCYATEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDVN-----RVRKETRTGCPAMIRMRQVDSKRWRVLEVTLDHNHLL 183 69*****************************************9988.....999********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.3E-19 | 100 | 183 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.7E-24 | 303 | 395 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.606 | 590 | 626 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 9.0E-5 | 598 | 622 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-6 | 601 | 628 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 711 aa Download sequence Send to blast |
MERSESVDED VQASEYLQND EIPERDDPLS DGGCALPIDE ALVCSSDHEI DVGFCQDQER 60 KSEDDATGEF DEQSGLLAER KDFDAPAVGM EFESYDDAYN YYNCYATEVG FRVRVKNSWF 120 KRRSKEKYGA VLCCSSQGFK RINDVNRVRK ETRTGCPAMI RMRQVDSKRW RVLEVTLDHN 180 HLLGAKLYKS VKKNGTGTKR KCVSSPVSDA KTIKLYRARV MDTENSVDPN STLKKQFQNS 240 AGSPDLLNLK KGDSAAIYNY FCRMQLTNPN FFYLMDVNDE GQLRNVFWAD AFSKISCSYF 300 GDVIFIDNSY ISGKFEIPLV TFTGVNHHGQ TTLLSCGLLA GETIESYHWL LKVWYNVMKC 360 SPQTIVTDRC KPLEAAISQV FPRSHHRFTL THIMRKIPEK LGGLHNYDGV RKAFTKAVYE 420 TLKVVEFEAA WGFMVHNFGV IDNEWLRSLY EERVKWAPVY LKDTFFAGIA AAHPGETLNP 480 FFERYVHKQT PLKEFLDKYE LALQKKHKEE TLSDIESLTL NTLELKTKCS FETQLCRIYT 540 RNMFKKFQVE VEEMYSCFST TQLHVDGPFV IFLVKERVQG ESNRREIRDF EVLYNRSVGE 600 VRCICSCFNF YGYLCRHALC VLNFNGVEEM PLRYILPRWR KDYKRVHFAD NGLTTGFVDG 660 TDRVQWFDQL YKNALQLVEE GAVSLNHYKV AMQSLEQSLD KVHSVEEKQE * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4237s0016.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY080775 | 0.0 | AY080775.1 Arabidopsis thaliana unknown protein (At1g52520) mRNA, complete cds. | |||
GenBank | AY133776 | 0.0 | AY133776.1 Arabidopsis thaliana clone U10495 unknown protein (At1g52520) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006306897.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | R0IMD0 | 0.0 | R0IMD0_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4237s0016.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10788 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4237s0016.1.p |
Publications ? help Back to Top | |||
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