PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4153s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Nin-like
Protein Properties Length: 269aa    MW: 30624.8 Da    PI: 8.3505
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4153s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.39.7e-26127176352
               RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          k++s e +s yF++pi++AAkeL+++lT+LKr+CR++GI+RWPhRk+ sl
  Cagra.4153s0001.1.p 127 KTLSKEIISLYFYMPIAQAAKELNIGLTLLKRRCRELGIQRWPHRKLMSL 176
                          899********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.132107197IPR003035RWP-RK domain
PfamPF020423.8E-21128176IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDSFCKLEYD QVFGKEDNSF SFLNNSSLYS SHQSELANLF YDLEDNFLPY TTNSSNYLLS  60
PSSFMALPDL EPISIVSHDD LLSGYGSVSW TEEESMFDFD LEKKSETIST KKKRCREECV  120
SSCSVSKTLS KEIISLYFYM PIAQAAKELN IGLTLLKRRC RELGIQRWPH RKLMSLQKLI  180
SNVKELKKME GEGNEEKLRN ALEKLEKEKK LIEELPHLKF GDKTKRLRQA CFKANHKRKR  240
RHVMSTSITS SSSSTSSSSS SVSGLSDS*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4153s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0118098e-99AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence.
GenBankCP0026848e-99CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305917.21e-163protein RKD1
SwissprotQ9M9U91e-134RKD1_ARATH; Protein RKD1
TrEMBLR0IJY61e-162R0IJY6_9BRAS; Uncharacterized protein
STRINGCagra.4153s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.11e-89RWP-RK domain-containing protein