PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.4137s0013.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

G2-like

Protein Properties

Length: 102aa MW: 12353.1 Da PI: 10.6882

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.4137s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	81.9	7.1e-26	2	55	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 r+rWt + H+ Fv+ave+LGG+ +AtPktil+ m+ ++t +++kSHLQ+YR Cagra.4137s0013.1.p 2 SRMRWTDDRHHLFVQAVESLGGERNATPKTILNRMSARDITTSQIKSHLQMYRK 55 69***************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.224	1	58	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.4E-23	2	57	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.28E-15	2	58	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-22	2	57	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-7	3	54	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MSRMRWTDDR HHLFVQAVES LGGERNATPK TILNRMSARD ITTSQIKSHL QMYRKKKERD 60 SIKERRMIRQ VNQRQSQQYV QIYENLRDDV QIEERFLYIL N*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269\|PubMed:18594992}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.4137s0013.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023635981.1	8e-61	probable transcription factor KAN2
Swissprot	Q0J235	3e-15	ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBL	R0HDE7	3e-37	R0HDE7_9BRAS; Uncharacterized protein
STRING	Cagra.4137s0013.1.p	1e-68	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04580.1	6e-22	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cagra.4137s0013.1.p