PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cagra.4093s0028.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 467aa MW: 53274.9 Da PI: 6.3058 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.5 | 2.3e-08 | 384 | 422 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA + gLt +qV++WF N R + Cagra.4093s0028.1.p 384 MFQNflHPYPKDSEKHLLAIRSGLTRSQVSNWFINARVR 422 5887779******************************88 PP | |||||||
2 | BELL | 90.9 | 1.3e-29 | 259 | 329 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r++l+++k++Ll+ll++Vd+rY+++v++++tv+s+F+a+++l++ +++t++Al++iS+ +++L+++i+++i Cagra.4093s0028.1.p 259 QRRALESQKTHLLDLLQMVDDRYSHCVDEIHTVVSAFHAATELDP-QLHTRFALQTISFLYKNLRERICKKI 329 6899*****************************************.************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 6.7E-59 | 189 | 327 | IPR006563 | POX domain |
Pfam | PF07526 | 2.2E-28 | 195 | 325 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 10.981 | 363 | 426 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.10E-9 | 366 | 427 | No hit | No description |
SMART | SM00389 | 7.1E-5 | 366 | 430 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-15 | 367 | 435 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-25 | 369 | 432 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.5E-14 | 383 | 422 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 467 aa Download sequence Send to blast |
MDNDNTFTSL DNVMANQNPL LMDFIPSRED STPFSTMLPW NSIRSDPLQM AGFDFFNSML 60 TNKYLSSSSR SFDDVQENRN VQSFEVMAPP PPPPLDHFRP YDDSSNNLWG FEGNSEFQTY 120 SGVVGPSEPM MSTFGEEDFP FLISNKRNNE LSLSLATDVS DECSEISLCG ATKLASEQAS 180 CSSKDISTQS FSQLIFGSKY LHSVQEILSH FASYSLDYSS RGTESAAASS AFHSRFENLT 240 EFLDDDSNNS EAEFGSTLQR RALESQKTHL LDLLQMVDDR YSHCVDEIHT VVSAFHAATE 300 LDPQLHTRFA LQTISFLYKN LRERICKKIL AMGSVLERGK DKSQENSMFH QHCLLQQLKR 360 KNHQIWRPQR GLPEKSVSVL RTWMFQNFLH PYPKDSEKHL LAIRSGLTRS QVSNWFINAR 420 VRLWKPMIEE MYAEMNKRKL NNSHLQPNGA TLRMPKSVMM SQAMHK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 9e-14 | 372 | 430 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 9e-14 | 372 | 430 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cagra.4093s0028.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY072174 | 0.0 | AY072174.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds. | |||
GenBank | AY096513 | 0.0 | AY096513.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds. | |||
GenBank | X80126 | 0.0 | X80126.1 A.thaliana AtH1 mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006283680.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_023634731.1 | 0.0 | homeobox protein ATH1 | ||||
Refseq | XP_023634732.1 | 0.0 | homeobox protein ATH1 | ||||
Swissprot | P48731 | 0.0 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | R0GZK7 | 0.0 | R0GZK7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4093s0028.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8228 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32980.1 | 0.0 | homeobox gene 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cagra.4093s0028.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|