PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4031s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 331aa    MW: 36646.8 Da    PI: 9.7988
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4031s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68e-31263320359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++++++++tYegeHnh+
  Cagra.4031s0005.1.p 263 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCIDETSMLIVTYEGEHNHS 320
                          9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.1E-15222259IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.0E-33249320IPR003657WRKY domain
PROSITE profilePS5081129.356256322IPR003657WRKY domain
SuperFamilySSF1182901.57E-26259320IPR003657WRKY domain
SMARTSM007744.6E-37261321IPR003657WRKY domain
PfamPF031061.4E-26263319IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEEVEAANKS AIESCHGVLN LLSQQSSDPK SLMVETGEAV SKFKRVASLL SRGLGHGKFR  60
TINKFRSSFP QHIFLESPIC CANDDYTQVL APEPLQMVPA SAVFDGIEPK HRMAHPPPLM  120
LSHKMCVDKS FLELKPPPFR APYQLIHNHQ QIAYSRSNSG VNLKFDGSGS SCYTPSVSNG  180
SRSFVSSLSM DASVADYDRN SFHLTGLSRG SDHISQHSRK MCSGSLKCGS RSKCHCSKKR  240
KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE  300
RCIDETSMLI VTYEGEHNHS RILSSQSAHT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20254319771WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4031s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0534200.0AY053420.1 Arabidopsis thaliana AT3g04670/F7O18_30 mRNA, complete cds.
GenBankAY1335860.0AY133586.1 Arabidopsis thaliana AT3g04670/F7O18_30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299280.10.0probable WRKY transcription factor 39
SwissprotQ9SR070.0WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLR0I6V70.0R0I6V7_9BRAS; Uncharacterized protein
STRINGCagra.4031s0005.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38852359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.10.0WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]