PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3957s0020.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 393aa    MW: 41039.2 Da    PI: 8.1256
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3957s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.4e-0992115125
                          --S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                          +kt+lC+ f++ GtC+y  +C+FaH
  Cagra.3957s0020.1.p  92 FKTKLCCKFRA-GTCPYVTNCNFAH 115
                          69*********.************* PP
2zf-CCCH42.51e-13268293126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt++C+ +  tG+C++G++C+FaHg
  Cagra.3957s0020.1.p 268 WKTRICNKWEITGYCPFGAKCHFAHG 293
                          8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-1389124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-789122IPR000571Zinc finger, CCCH-type
SMARTSM003560.003991117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.67191118IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-792115IPR000571Zinc finger, CCCH-type
SMARTSM003560.47172199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-7172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244172200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-8173199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-17263297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-10263298IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9267294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178267295IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-11268293IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSHHRRDSGG DVVHVIPTNN PPPENWFPNL GDSAVWATED DYNRAWAVNP DNVSGDNNGP  60
PNKKTRGSPS SSSATTTSAA SNRTKAIGKM FFKTKLCCKF RAGTCPYVTN CNFAHTVEEL  120
RRPPPNWQEI VAAHEEERSG GMGTPTVAVP EVPREEFQIP SLVSSTAESG RSFKGRHCKK  180
FYTEEGCPYG ESCTFLHDEA SRNRESVAIS LGPGGYGGGG GGGGGGVGSG GGSASGGGGG  240
GNSNVVVLGG GGGTGSGSGI HIVKPSNWKT RICNKWEITG YCPFGAKCHF AHGAAELHRF  300
GGGLVEGEGK DGVSPNSDTK QTGQTPKGNS ETPTLLSPGG VPHHADPSYH SGVALQRATS  360
AVTQKPGIRT HQKWKGPAKI SRIYGDWIDD IE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3957s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180130.0AK118013.1 Arabidopsis thaliana At1g32360 mRNA for putative RING-H2 zinc finger protein ATL6, complete cds, clone: RAFL19-22-M03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305028.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM30.0C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLR0GQ620.0R0GQ62_9BRAS; Uncharacterized protein
STRINGCagra.3957s0020.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.10.0C3H family protein