PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3807s0035.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 421aa    MW: 48185.9 Da    PI: 9.6121
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3807s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.8e-1523921287
                         HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3 12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                          s  l +p kf++++ +g   e+kt+ le+  s +sW+v++  ++++    lt GWkeF+++++L+ gD+++F+++g 
  Cagra.3807s0035.1.p 23 DS-YLNIPMKFFSAYiEGR-YEGKTVELESdASEKSWKVEM--EGRR----LTFGWKEFASSHDLRIGDVIIFRHQGA 92
                         44.489*********7444.57789***997889*******..8888....9**********************7653 PP
2B370.42.3e-22201289695
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          ++ ++l+++ l +pkkfa++  ++k +s +++l++e  ++W++ l++rk+s+++++++GW++F+++ngLk gD v+F+l++++ ++++++
  Cagra.3807s0035.1.p 201 LTDSNLREDTLFFPKKFATSGALIK-GSNKIVLMNEVAKKWRLILKFRKSSRTFYMRDGWRSFCHENGLKPGDAVTFELESNNLKRPLLR 289
                          4778899999********9999987.567**************************************************98876666665 PP
3B3482.2e-153214081298
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                          +s+   lpk+f++ + +++   +++tl d++g+ W v+l ++++  ++ l+ G k+F kang k+++++vF+l+++ +++ +++++++
  Cagra.3807s0035.1.p 321 SSSVTHLPKNFVKVNRMENLARRKITLLDKHGKDWAVTLVMERRNTQTRLGFGLKDFFKANGTKANESLVFELVWEdKTTLPLLRFCS 408
                          344457******999777778889****************9999999***************************99777777877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-218109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-218105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.66111103IPR003340B3 DNA binding domain
CDDcd100172.87E-1612100No hitNo description
SMARTSM010191.2E-2014103IPR003340B3 DNA binding domain
PfamPF023623.4E-102691IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-19186288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-21192284IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-19195284No hitNo description
PROSITE profilePS5086315.58196293IPR003340B3 DNA binding domain
SMARTSM010192.0E-23197294IPR003340B3 DNA binding domain
PfamPF023621.8E-20200287IPR003340B3 DNA binding domain
PROSITE profilePS5086310.842310409IPR003340B3 DNA binding domain
SMARTSM010191.7E-13315410IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-12322404IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-13322408IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-12322409IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-10327397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MADPVLQSPE NPHFFKPLLP GFDSYLNIPM KFFSAYIEGR YEGKTVELES DASEKSWKVE  60
MEGRRLTFGW KEFASSHDLR IGDVIIFRHQ GALLFHVACF GPSCCEIQYG QSCNDEDHLY  120
DDQEDLRNVS MKQSLKTEVE SSLDEDKDNM GKSCISETYT RSKTFPTCMR TGKLPRKKHK  180
RIPEADAKSF SSDEFRFVAS LTDSNLREDT LFFPKKFATS GALIKGSNKI VLMNEVAKKW  240
RLILKFRKSS RTFYMRDGWR SFCHENGLKP GDAVTFELES NNLKRPLLRF STAEFTSVST  300
KDCNKLGKIN KSGDSQKVSS SSSVTHLPKN FVKVNRMENL ARRKITLLDK HGKDWAVTLV  360
MERRNTQTRL GFGLKDFFKA NGTKANESLV FELVWEDKTT LPLLRFCSNA KTYSNLRPSY  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3807s0035.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634987.11e-168LOW QUALITY PROTEIN: B3 domain-containing protein REM7
SwissprotQ8H2D01e-123REM7_ARATH; B3 domain-containing protein REM7
TrEMBLA0A178UT081e-160A0A178UT08_ARATH; Uncharacterized protein
STRINGCagra.3807s0035.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31660.11e-125B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]