PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3793s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family FAR1
Protein Properties Length: 766aa    MW: 88071.2 Da    PI: 7.637
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3793s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.27.4e-2044118189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          ++Yn++A+++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw+++++++eHnHel
  Cagra.3793s0006.1.p  44 DYYNSFATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHEL 118
                          69**************************************876..............589***************************98 PP
2FAR168.41.8e-21205281191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fY++YA+ vGF+vr+ +  +sk +g+it+r+fvCskeg+++++              r+gC a +++k++++g w v++l+++HnHel 
  Cagra.3793s0006.1.p 205 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHELE 280
                          6***************************************9994..............799***************************97 PP

                 FAR1  91 p 91 
                          p
  Cagra.3793s0006.1.p 281 P 281
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1544118IPR004330FAR1 DNA binding domain
PfamPF031017.1E-17205281IPR004330FAR1 DNA binding domain
PfamPF105511.8E-25377469IPR018289MULE transposase domain
PROSITE profilePS5096610.373651687IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-8658684IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-8662689IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MVVKAYPLGM VRIMNNNGIG EDEGDSVVEP YVGLEFDTAE EARDYYNSFA TRTGFKVRTG  60
QLYRSRTDGT VSSRRFVCSK EGFQLNSRTG CPAFIRVQRR DTGKWVLDQI QKEHNHELGG  120
HVEETTPRPS VQQRAPAPTK LGISVPHRPK MKVVDEADKG RSCPSGVISF KRFKGAEESD  180
EQTEPKATTE PYAGLEFGSA NEACQFYQAY AEVVGFRVRI GQLFRSKVDG SITSRRFVCS  240
KEGFQHPSRM GCGAYMRIKR QDSGGWIVDR LNKDHNHELE PGKKNAGMKK ITEDVTGGLD  300
SVDLIELNDF NNHISTTREN TIGKEWYPVL FDYFQSKQAE DMGFFYAVEL DSNGSCMSIF  360
WADSRSRFAC SQFGDAVVFD TSYRNGEYSV PFATFIGFNH HRQPVLLGGA LVADESKEAF  420
SWLFQTWLRA MSGRRPRSII ADQDLPIQQA VAQVFPGAHH RFSAWQIRSK EQENLRSFPN  480
EFKYEYEKCL YQSQTTVEFD TMWSALVNKY GLRDNMWLRE IYEKRENWVP AYLRASFFGG  540
IPVNGTFEPF YGTSLNSLTS LREFISRYEQ GLEQRREEER KEDFNSYNLQ PFLQTKEPVE  600
EQCRRLYTLT IFRIFQSELA QSYNYLGLKT YEEGAISRFL VRKCGNENEK HAVTFSASNL  660
NASCSCQMFE YEGLLCRHIL KVFNLLDIRE LPSRYILHRW TKNAEFGFVR DVESGVTSQD  720
LKALMIWSLR EAASKYIEFG TSSLEKYKLA YEIMREGGKK LCWQR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3793s0006.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3602700.0AF360270.1 Arabidopsis thaliana unknown protein (At3g06250) mRNA, complete cds.
GenBankATAC0189070.0AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence.
GenBankAY1504460.0AY150446.1 Arabidopsis thaliana unknown protein (At3g06250) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297026.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
RefseqXP_023641342.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
RefseqXP_023641343.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLR0HJN80.0R0HJN8_9BRAS; Uncharacterized protein
STRINGCagra.3793s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]