PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3527s0039.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 662aa    MW: 73433.2 Da    PI: 9.8863
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3527s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.3e-0852103247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47 
                          + W t++++ l++avk++   +W+++a++++      +  ++ +c++++q++
  Cagra.3527s0039.1.p  52 QVWGTWDELVLACAVKRHAFTDWDSVAKEVQarsrssLIVSAVNCRLKYQDL 103
                          68*****************************755555333677888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002496.9E-752103IPR001005SANT/Myb domain
CDDcd001670.0011554104No hitNo description
SMARTSM002971.8E-21289398IPR001487Bromodomain
SuperFamilySSF473701.01E-18291395IPR001487Bromodomain
Gene3DG3DSA:1.20.920.104.1E-19294455IPR001487Bromodomain
CDDcd043691.27E-16300393No hitNo description
PfamPF004391.4E-12301383IPR001487Bromodomain
PROSITE profilePS5001413.354308379IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MKEEEEEEET VISNGMNDDD DTNNINSCSG FDNNRVGDGD GDDNSNLNQI SQVWGTWDEL  60
VLACAVKRHA FTDWDSVAKE VQARSRSSLI VSAVNCRLKY QDLKRRFEDS VDGGERNSDA  120
AAEAVEDDEV GEIPWLDQLR SLRVAELRRD VQRCDDSILS LQLKVKKLEE EKDGDDGDNK  180
PDLGNDETKP EKLNRETAES DRDDNRSMNE SNSTASVDKI ADHDRLDGDK MVPAYPDPDP  240
VYKDSAEGEK TVSKRSEMSN SGELDESGTS TGNGKRKEKK YRSGGGGGDI KSAGYKSQPL  300
KDIIKLIRSH PRGSVFESRL RSQETKDYKR LIRQHLDIKT IEKKLEKGSY VSSTLSFYRD  360
LKLLFTNAIV FFPPSSPESM AAHELRSLVS NQIKKPTGML GDGVVKAEAG SSVSRPKSSV  420
LPLVACKKNS SSSKKSSPSS SSKQKDDKKS QEVSEEKTVT TTTTTTTTTS ARSSRRTSKE  480
VAVVAKDTKT GRAKNNNKKQ KKVTKTESSS DDDSEKEETP KTEKKTVAIA SDKKKSVADF  540
LKRIKKNSPQ KGKETTSKAQ KKSDGNSKKE SEHQKKSDGN IKKENEHQKK SDGNAKKENS  600
KAKPRELRSN STGKKKAEVE NNNSKSSSKR KQPKETAEPT TVKRGRDSVK ESKQPKKRSR  660
R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3527s0039.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290704.10.0DNA ligase 1
TrEMBLR0FMA50.0R0FMA5_9BRAS; Uncharacterized protein
STRINGCagra.3527s0039.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.10.0DNA-binding bromodomain-containing protein