PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3501s0038.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 476aa    MW: 51100.8 Da    PI: 9.3544
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3501s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-0586108123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ C+k F r  nL+ H r H
  Cagra.3501s0038.1.p  86 FICEVCNKGFQREQNLQLHRRGH 108
                          89*******************88 PP
2zf-C2H212.80.00035162184123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k++  +s+ k H +t+
  Cagra.3501s0038.1.p 162 WKCDKCSKRYAVQSDWKAHSKTC 184
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-785108No hitNo description
Gene3DG3DSA:3.30.160.605.1E-685108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9986108IPR007087Zinc finger, C2H2
PfamPF121712.2E-586108IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.005286108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
SMARTSM00355120127157IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-5150183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.38E-7157182No hitNo description
SMARTSM00355140162182IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSSSYNNSIA SSSTQSFLLS GAAAASGVGA TNFNRDQEPP MTMLQPPPNS TVAPPPKKRR  60
NQPGNPNPDA EVIALSPKTI MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSNK  120
EVRRKVYLCP EPSCVHHDPA RALGDLTGIK KHYYRKHGEK KWKCDKCSKR YAVQSDWKAH  180
SKTCGTKEYR CDCGTIFSRR DSYITHRAFC DALIQESARN PTVSFTAMAA AGGGAGRHGF  240
FGGAASALSH NHFGGTSASG FTSLAASYNL NRSSSDKFEE YAPQSANPNP GGPPNFLMQC  300
AANQGLLAQN DQGLMNQHGL MNLGDHNLNS NNNNLFNLGY FQDTKNPNQT SVPSLFTGGG  360
ADNNDSSALL RGLPPSSPSS VVVNDYGDTG NGNLQGLIMN TLAESSDHQS RSGSIFDLHF  420
GSNLSMGGSD RLTLDFLGVN GGGMVSTVNG RGGRNGAPLD TDMKFSHPNH PFGKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34158224369Zinc finger protein JACKDAW
5b3h_F4e-34158224369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00142DAPTransfer from AT1G14580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3501s0038.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307394.20.0LOW QUALITY PROTEIN: protein indeterminate-domain 6, chloroplastic
SwissprotQ8RWX70.0IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLR0GWH30.0R0GWH3_9BRAS; Uncharacterized protein
STRINGCagra.3501s0038.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.20.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]