PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.3356s0067.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HSF | ||||||||
Protein Properties | Length: 437aa MW: 48997.7 Da PI: 5.5872 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.6 | 1.3e-35 | 37 | 128 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y+++ed++++ +isw +++nsf+v++e+ef++++Lpk+Fkh+nf+SFvRQLn+YgF+kv++ + +e++++ F +g+k Cagra.3356s0067.1.p 37 FLSKTYDMVEDPATDAIISWGSDNNSFIVWNESEFSRHLLPKHFKHNNFHSFVRQLNTYGFRKVDQGR---------QEYANEDFLRGEK 117 9***************************************************************9998.........57*********** PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 +ll+ki r+ks Cagra.3356s0067.1.p 118 HLLKKISRRKS 128 *********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 8.7E-53 | 33 | 126 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.2E-37 | 34 | 126 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.75E-33 | 34 | 126 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.0E-31 | 37 | 126 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 37 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 88 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MDGGVVTGGV ANSGESVPPR NPHPATLLSA NDLPPPFLSK TYDMVEDPAT DAIISWGSDN 60 NSFIVWNESE FSRHLLPKHF KHNNFHSFVR QLNTYGFRKV DQGRQEYANE DFLRGEKHLL 120 KKISRRKSVQ GHHGSSLSQG QSSMAAVEVG RFGIEEEVEQ LKRDKNVLMQ ELVKLRQQQQ 180 TTDSKLQVMV KRLQVMELRQ KQIMSFFAKA VQNPTFLSHF IQKQTDNTML VTEANKKRRL 240 REDTATENHS SAASDGHGQI VKYQPRRSDS MMWSRMKIDD EYSYLDGFAS PDRVSGCTLQ 300 EVLPTTSGQS HAYAPAASGQ HLSYLPSTST SLPDTVMPTI HRMPQSRDSI NDFPTEDYMD 360 TEKNVSEPFI SPSPFLDGGS VPIQVDGILE DPDIGELLSS FDFLEECLTE SPVLGDATTL 420 ENSNNTNGRY MDKFIE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 9e-25 | 4 | 126 | 1 | 129 | Heat shock factor protein 1 |
5d5v_B | 9e-25 | 4 | 126 | 1 | 129 | Heat shock factor protein 1 |
5d5v_D | 9e-25 | 4 | 126 | 1 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.3356s0067.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006283759.1 | 0.0 | heat stress transcription factor A-1a | ||||
Swissprot | P41151 | 0.0 | HFA1A_ARATH; Heat stress transcription factor A-1a | ||||
TrEMBL | R0F4J6 | 0.0 | R0F4J6_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.3356s0067.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15101 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17750.1 | 0.0 | heat shock factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.3356s0067.1.p |
Publications ? help Back to Top | |||
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