PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3356s0040.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 309aa    MW: 34665.1 Da    PI: 5.2958
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3356s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19158208255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr ++ +g+++AeIrdp   + + +r++lg+f ta eAa+a+++a+ +l+g
  Cagra.3356s0040.1.p 158 HYRGVRMRP-WGKFAAEIRDP---NrRGTRVWLGTFETAIEAARAYDKAAFRLRG 208
                          69*******.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-31158217IPR001471AP2/ERF domain
PROSITE profilePS5103223.96158216IPR001471AP2/ERF domain
PfamPF008472.2E-13158208IPR001471AP2/ERF domain
CDDcd000181.21E-29158216No hitNo description
SMARTSM003804.9E-35158222IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-22158218IPR016177DNA-binding domain
PRINTSPR003672.5E-10159170IPR001471AP2/ERF domain
PRINTSPR003672.5E-10182198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MPSPTEASAL LLIKKYLLDE SSPLPIHAPT DRWMNQPDFS IFGSSGFASF DHTGFEFSNF  60
ETPKPEIIDL VTPKPEISDF EVKSEYPLES NDSFTFQSNP IVQSNRKPKT LKIAPPNRTE  120
WIQFATGNSK PEIIEFATGN RKPEIPVPPV VVAEEKWHYR GVRMRPWGKF AAEIRDPNRR  180
GTRVWLGTFE TAIEAARAYD KAAFRLRGSK AIVNFPLEVD KWNPRGEDGH GQNNKRKRDG  240
GEEEVTVAEK VLKTEESHDV TFGGVNVESA KSDLTAIDDW DLTEFLSMPL LSPLSPHPPF  300
GFPQLTVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-28158220567ATERF1
3gcc_A2e-28158220567ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00437DAPTransfer from AT4G17490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3356s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615461e-162AL161546.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46.
GenBankCP0026871e-162CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973431e-162Z97343.1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282678.10.0ethylene-responsive transcription factor 6
SwissprotQ8VZ911e-148EF103_ARATH; Ethylene-responsive transcription factor 6
TrEMBLR0F2N50.0R0F2N5_9BRAS; Uncharacterized protein
STRINGCagra.3356s0040.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.11e-124ethylene responsive element binding factor 6