PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.3166s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 208aa MW: 23548.8 Da PI: 9.6665 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.3 | 4.6e-34 | 15 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp G+rFhPt++el+ +yL +k+ +++l+ ++i+ +d++ ++P ++p +++ek+ yfF+k+++ +++++r + + +gyWk+ gk++ Cagra.3166s0006.1.p 15 LPIGYRFHPTEQELILHYLLPKAFASPLPS-SIIPVFDLFFSHPLTFPG--DSKEKHRYFFCKKKQVSSNEHRIKTVSGDGYWKHIGKER 101 699*************************99.88***************4..4578999******************************** PP NAM 91 evlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++++ g++vg+++tL+fy ++++++ ++t+W m ey+l Cagra.3166s0006.1.p 102 PIIA-CGKAVGIRRTLAFYetNKSSSNCNRTRWSMTEYSL 140 ****.999***********4434667778*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-40 | 9 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.493 | 15 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-20 | 16 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MEMEKRIVVN GGMRLPIGYR FHPTEQELIL HYLLPKAFAS PLPSSIIPVF DLFFSHPLTF 60 PGDSKEKHRY FFCKKKQVSS NEHRIKTVSG DGYWKHIGKE RPIIACGKAV GIRRTLAFYE 120 TNKSSSNCNR TRWSMTEYSL AGFASAKVFG EWAVYNVYER KGSKARKQRK SRDMDDEDLS 180 CSIHFIVGSS DHETGPPPPS PPTSADE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-21 | 1 | 140 | 1 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.3166s0006.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY084216 | 0.0 | AY084216.1 Arabidopsis thaliana clone 100085 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288429.2 | 1e-154 | NAC domain-containing protein 41 | ||||
TrEMBL | R0FGA4 | 1e-151 | R0FGA4_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.3166s0006.1.p | 1e-154 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7874 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14000.1 | 1e-129 | NAC domain containing protein 84 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.3166s0006.1.p |