PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2991s0039.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 327aa    MW: 36535.4 Da    PI: 7.3781
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2991s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.2e-063555526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                          C f+++ G C yG+rC++ H+
  Cagra.2991s0039.1.p 35 VCTFYQK-GMCFYGSRCRYDHV 55
                         5******.*************7 PP
2zf-CCCH21.83.2e-07112134326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          ++lC+ fa+ G C++G++C+ +Hg
  Cagra.2991s0039.1.p 112 YPLCS-FAAAGDCPRGNQCPHMHG 134
                          799**.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.633229IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-7427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4730IPR000571Zinc finger, CCCH-type
PfamPF156631.2E-7758No hitNo description
PROSITE profilePS5010314.4183057IPR000571Zinc finger, CCCH-type
SMARTSM003560.0033156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-53254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.174109136IPR000571Zinc finger, CCCH-type
SMARTSM003560.033109135IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-4112134IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.18E-13166242No hitNo description
Gene3DG3DSA:3.30.40.101.5E-10170237IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001625.78E-4177237No hitNo description
SMARTSM001842.5E-7178235IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.489178236IPR001841Zinc finger, RING-type
PfamPF000974.4E-8178235IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180202211IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.32265293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.361265294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSSDRILCKF FVHGSCLKGD NCGFSHDSKD PPNNVCTFYQ KGMCFYGSRC RYDHVRASSD  60
LPTPPLSSDS ESLDRSLSTA PSMSFQRQGY DGDGNNHGDK SSSVYCVHPR EYPLCSFAAA  120
GDCPRGNQCP HMHGDLCATC GKKCLHPFRP EEREEHTKEC EKKQKHIEAL KQSQDIECSV  180
CLDRILSKAT PGERKFGLLT ECDHPFCIQC IRNWRSSAPV SGMDVNSTLR ACPICRKLSY  240
FVVPSVVWYS TPEEKKEIID IYKAKLRSID CKHFNFGNGS CPFGASCFYK HAYPDGHLEE  300
VVLRHLGSQE GDSIRLSELL GGLQIF*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2991s0039.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0703660.0AY070366.1 Arabidopsis thaliana unknown protein (At3g08505) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298128.10.0E3 ubiquitin-protein ligase makorin isoform X1
RefseqXP_006298129.10.0E3 ubiquitin-protein ligase makorin isoform X1
SwissprotQ6IDS60.0C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLR0G6500.0R0G650_9BRAS; Uncharacterized protein
STRINGCagra.2991s0039.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.20.0C3H family protein