PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2826s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 448aa    MW: 49669.4 Da    PI: 6.2085
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2826s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011224246123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cgk F++   L  H  +H
  Cagra.2826s0006.1.p 224 FECSVCGKGFTSYQALGGHKASH 246
                          89**********99999888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.84E-8223296No hitNo description
PfamPF139123.3E-12224247IPR007087Zinc finger, C2H2
SMARTSM003550.026224246IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492224246IPR007087Zinc finger, C2H2
PROSITE patternPS000280226246IPR007087Zinc finger, C2H2
PfamPF139122.0E-11274298IPR007087Zinc finger, C2H2
SMARTSM003550.62274296IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280276296IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDQKALDQCP PLTKLAALKH KFLQQDDLRS YERPKRKISS PPRDDDPSSK RLRIKFRRGR  60
EDGEYENDAV LDESPPPRLK SSEPSIRQRS TGDEDHQENE FTSDAVFYKP WLDHLRLKRL  120
RLGEGEDPPS SSSSPSVDDI AALTLIQFSR DKRQTKTQTL IPQPQTQTLI PQPQTLKPQP  180
QTLIPQPQTL IPQPQTLKPQ SQPQPQPHTE TETTEPQETK CELFECSVCG KGFTSYQALG  240
GHKASHRVKP LQPLVENAGE KTREKLLAPS GKIHKCSICH VLFPTGQALG GHKRRHYEGV  300
LGGHKHEVVL KLSPNSNGSL ATKVLDQEQS LSVSDNVVNG HTLNQEEVVL SSDKCSLSDA  360
STGKKWLDLE LSLRKSEGVV DADDKPSQEE VAVEENKWSP SSNGSGVTNV TDPEQSQRRL  420
IDLNIPLSPE SDESGSGEVE EVESTAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2826s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644535.10.0uncharacterized protein LOC17900837
TrEMBLR0I2R10.0R0I2R1_9BRAS; Uncharacterized protein
STRINGCagra.2826s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149691217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.26e-26zinc-finger protein 2